Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013475.1 Corchorus capsularis cultivar CVL-1 contig13496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20921

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--119
29
3.4
29
83
4
121
36
17
29
15
1.92
426--694
22
12.5
21
69
16
122
41
8
14
36
1.76
611--695
23
3.7
23
80
1
91
37
8
12
41
1.74
426--694
44
6.2
45
71
12
152
41
8
14
36
1.76
1001--1143
50
3.2
41
75
18
126
42
10
6
39
1.66
1844--1918
31
2.5
31
86
2
98
25
14
28
32
1.95
3450--3711
88
3.0
89
88
4
397
29
17
24
29
1.97
3450--3754
88
3.5
87
76
12
291
29
16
22
30
1.96
3844--3929
35
2.5
35
94
0
145
29
16
30
24
1.96
3935--4000
30
2.2
31
97
2
125
24
13
24
37
1.91
3947--4009
30
2.2
29
85
5
83
28
12
22
36
1.91
4014--4082
5
13.2
5
82
11
61
0
2
17
79
0.85
4014--4082
11
6.6
10
77
15
61
0
2
17
79
0.85
6942--7084
50
3.2
41
75
18
126
42
10
6
39
1.66
7578--7633
22
2.5
22
83
11
62
51
5
12
30
1.61
7645--7698
22
2.5
22
84
0
63
40
11
11
37
1.76
7713--7756
22
2.0
22
86
8
63
38
4
13
43
1.65
9342--9378
15
2.4
16
90
4
58
16
0
2
81
0.81
10111--10164
27
2.0
27
96
0
99
29
24
18
27
1.98
18341--18370
15
1.9
16
93
6
53
40
13
0
46
1.43

Tables:   1

The End!