Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013478.1 Corchorus capsularis cultivar CVL-1 contig13499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30194

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--93
45
2.1
45
97
0
177
31
19
24
24
1.98
452--933
166
2.9
165
83
2
617
28
14
17
38
1.90
16577--16641
9
7.4
9
74
6
62
46
1
1
50
1.20
16585--16643
2
31.5
2
77
13
54
47
1
1
49
1.21
16573--16641
26
2.7
26
79
4
86
47
1
1
49
1.19
16647--16678
11
2.9
11
95
0
55
12
18
40
28
1.87
19182--19605
167
2.6
157
83
4
517
40
15
15
29
1.88
20293--20418
45
2.8
44
91
1
189
27
19
17
35
1.94
23215--23273
27
2.2
27
90
0
91
30
5
20
44
1.73
24797--24830
3
11.3
3
100
0
68
32
0
0
67
0.91
25920--25964
15
3.1
15
80
3
56
42
0
0
57
0.98
25912--25965
23
2.3
24
84
12
76
40
0
0
59
0.98
26674--26699
2
13.0
2
100
0
52
50
0
0
50
1.00
28881--28905
13
1.9
13
100
0
50
28
0
40
32
1.57
29594--30164
282
2.0
280
85
7
771
31
14
18
35
1.90

Tables:   1

The End!