Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013481.1 Corchorus capsularis cultivar CVL-1 contig13502, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12294

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3255--3314
21
2.9
21
69
16
52
10
50
26
13
1.73
4109--4136
11
2.5
11
100
0
56
35
7
7
50
1.57
5717--5741
10
2.5
10
100
0
50
48
20
8
24
1.76
6661--6693
6
5.7
6
96
3
59
30
0
15
54
1.41
8003--8040
18
2.2
18
86
9
53
5
39
15
39
1.70
8003--8120
30
3.9
30
87
0
155
9
38
13
38
1.77
8257--8313
18
3.2
18
82
0
69
57
12
0
29
1.35
8323--8364
21
2.0
21
95
0
75
52
7
0
40
1.29
10315--10356
15
2.7
15
80
16
50
9
11
33
45
1.73
10315--10360
16
2.9
17
84
9
53
8
10
34
45
1.70

Tables:   1

The End!