Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013482.1 Corchorus capsularis cultivar CVL-1 contig13503, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34610

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1259--1295
2
19.0
2
88
5
58
45
0
0
54
1.00
3178--3249
37
1.9
38
83
13
96
37
27
22
12
1.90
11874--11913
16
2.5
16
84
8
55
32
5
47
15
1.66
13184--13289
40
2.7
40
91
4
162
50
10
13
26
1.73
13316--13449
35
3.6
35
77
15
142
49
7
17
25
1.73
13294--13451
79
2.1
76
88
5
230
51
6
18
23
1.70
13320--13514
73
2.6
75
85
6
243
48
8
19
24
1.76
13469--13547
41
1.9
42
92
2
133
44
11
22
21
1.84
13553--13742
70
2.7
71
92
4
305
49
10
12
27
1.73
13553--13721
35
4.8
35
96
2
302
49
10
11
28
1.73
13820--14160
35
9.8
34
83
5
350
43
9
21
25
1.82
19347--19372
10
2.6
10
100
0
52
23
7
19
50
1.73
20568--20602
18
2.1
18
89
10
56
60
11
11
17
1.59
26511--26715
38
5.4
38
79
8
245
31
20
20
26
1.98
26487--26715
115
2.0
115
86
2
318
33
20
20
25
1.97
26724--27050
44
7.6
43
76
13
300
25
22
21
30
1.98
26882--27031
80
1.9
79
88
1
228
26
21
17
34
1.95
28597--28630
16
2.2
16
89
5
52
29
2
8
58
1.43
33714--33739
13
2.0
13
100
0
52
15
0
7
76
0.99

Tables:   1

The End!