genome.fa.s13492.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013492.1 Corchorus capsularis cultivar CVL-1 contig13513, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87721

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106--192	32	2.8	32	80	3	97	13	43	35	6	1.71
2503--2559	28	2.0	28	100	0	114	38	0	28	33	1.57
3878--3938	31	2.0	31	93	0	104	42	18	14	24	1.88
6111--6145	14	2.4	15	90	4	54	25	48	0	25	1.51
7972--8030	30	2.0	30	83	3	75	32	6	13	47	1.69
8780--8821	20	2.0	21	90	4	68	30	4	23	40	1.75
9605--9645	16	2.5	16	85	14	57	41	0	2	56	1.13
10205--10229	4	6.2	4	100	0	50	24	0	0	76	0.80
15453--15496	15	3.0	14	83	9	52	34	0	2	63	1.07
15457--15496	20	2.0	20	85	0	53	30	0	2	67	1.04
16789--16828	20	2.0	20	85	0	53	67	2	0	30	1.04
16789--16832	15	3.0	14	83	9	52	63	2	0	34	1.07
16803--16832	15	2.1	15	93	6	53	63	0	0	36	0.95
22197--23001	438	1.8	436	82	5	1025	30	13	12	42	1.82
25716--25805	45	2.0	45	86	0	126	23	22	13	41	1.89
47365--47420	28	2.0	27	83	10	69	39	14	7	39	1.73
48911--49384	34	13.5	34	74	11	350	18	22	2	56	1.52
48964--49021	14	4.2	14	77	4	64	20	24	0	55	1.44
48943--49066	41	3.2	41	77	15	154	18	25	2	54	1.56
48978--49261	27	9.8	27	65	22	96	18	23	2	55	1.54
48911--49343	75	6.1	76	74	14	289	18	22	2	56	1.53
49026--49152	61	2.1	61	87	0	182	18	22	3	55	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49110--49198	45	2.0	46	88	2	135	16	22	1	59	1.44
49132--49170	18	2.2	18	85	0	51	12	20	2	64	1.40
48914--49379	107	4.4	102	81	11	453	18	22	2	56	1.53
49241--49299	14	4.3	14	76	4	57	18	22	1	57	1.49
49352--49409	15	3.9	15	79	2	64	20	13	3	62	1.46
49332--49443	50	2.2	50	81	6	129	19	18	3	58	1.54
49361--49409	7	6.7	7	79	9	53	20	14	2	63	1.40
49522--49625	53	2.0	53	88	0	154	16	21	7	54	1.66
49525--49625	26	3.8	26	81	12	118	16	19	7	55	1.66
53790--53837	23	2.1	23	88	0	69	79	0	6	14	0.92
56149--56285	37	3.7	37	77	1	130	26	16	40	17	1.90
58209--58273	30	2.2	30	86	8	89	16	13	29	40	1.88
59235--59303	26	2.7	26	90	0	111	34	15	14	34	1.89
61078--61119	15	2.9	15	82	3	50	52	2	0	45	1.13
63070--63106	15	2.6	15	91	8	60	37	5	8	48	1.56
66067--66152	36	2.4	36	78	0	91	36	15	26	22	1.93
72408--72457	15	3.6	15	79	20	72	52	12	0	36	1.39
72398--72459	26	2.4	26	94	0	115	51	11	0	37	1.38
72370--72443	11	6.5	11	69	18	53	47	9	1	41	1.44
77520--77587	31	2.2	32	87	10	104	27	20	1	50	1.57
79117--79173	24	2.4	24	87	0	87	61	26	12	0	1.31
79118--79170	12	4.3	13	81	11	58	60	28	11	0	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80446--80498	26	2.1	26	92	3	90	33	15	20	30	1.93
82346--82403	24	2.4	24	94	0	98	50	29	18	1	1.57
83849--83888	3	13.3	3	100	0	80	32	0	0	67	0.91
85361--85397	14	2.6	14	91	0	56	27	48	5	18	1.70

Tables:   1

The End!