Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013495.1 Corchorus capsularis cultivar CVL-1 contig13516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54534

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1543--1868
141
2.3
141
91
1
528
35
10
10
43
1.73
1842--2092
129
1.9
126
87
4
324
31
10
12
45
1.77
2114--2181
28
2.4
30
82
7
97
33
11
13
41
1.81
2114--2189
28
2.6
28
72
12
66
34
13
11
40
1.81
3831--3889
30
2.0
30
89
0
91
44
16
3
35
1.65
3506--3887
190
2.0
194
88
4
567
45
8
5
40
1.59
4918--4976
30
2.0
30
86
0
82
45
16
3
33
1.64
4594--4974
189
2.0
194
92
3
646
44
9
5
39
1.61
7515--7604
30
3.0
30
93
0
153
42
17
3
36
1.66
7629--7673
2
22.0
2
95
4
81
48
0
2
48
1.13
7629--7676
23
2.1
23
100
0
96
47
0
4
47
1.21
12301--12340
19
2.0
20
86
13
57
70
0
2
27
1.01
12319--12351
15
2.2
15
89
10
50
60
0
6
33
1.21
12901--13223
177
1.8
178
88
4
501
35
14
15
34
1.88
15665--15696
15
2.1
15
94
0
55
43
6
9
40
1.62
15610--15915
103
3.0
102
77
3
344
35
13
12
37
1.83
24156--24197
22
1.9
22
90
0
66
52
16
7
23
1.68
34533--34580
25
1.9
25
83
8
62
18
10
27
43
1.82
38131--38169
20
2.0
20
85
5
53
28
23
5
43
1.75
43270--43328
16
3.8
15
84
6
73
5
16
40
37
1.71
43301--43371
6
12.5
6
76
11
69
1
22
46
29
1.60
43302--43350
17
3.0
16
87
3
71
2
20
46
30
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43318--43371
23
2.3
23
93
0
90
1
24
48
25
1.61
44113--44198
22
3.7
22
72
17
75
2
13
48
34
1.56
46602--46668
33
2.0
33
100
0
134
44
17
23
13
1.85
47503--47574
33
2.2
33
87
0
99
33
8
18
40
1.80
47572--47693
33
3.7
33
88
0
172
33
8
17
40
1.79
48067--48125
30
2.0
30
90
6
93
32
18
28
20
1.96
51995--52068
26
2.8
26
75
16
80
21
14
21
41
1.89
52191--52246
16
3.4
16
68
18
51
19
19
10
50
1.77
52179--52248
34
2.1
34
97
2
133
17
17
11
54
1.71

Tables:   1

The End!