Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013496.1 Corchorus capsularis cultivar CVL-1 contig13517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45144

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1900--2000
27
3.8
26
78
12
116
56
7
20
14
1.64
1901--2010
53
2.1
53
91
3
177
54
8
20
17
1.67
2095--2271
68
2.5
70
76
16
188
54
4
22
19
1.62
2095--2339
35
6.9
35
72
17
177
54
4
23
18
1.61
2312--2363
26
2.0
26
85
7
70
59
1
21
17
1.47
2286--2367
14
6.2
13
73
17
53
56
2
23
18
1.54
2392--2525
7
18.7
7
68
10
65
57
2
19
20
1.51
2309--2512
20
9.7
22
75
9
178
55
3
19
21
1.59
2437--2535
14
7.1
14
71
8
67
55
3
21
20
1.56
2336--2512
85
2.1
84
82
7
207
55
3
19
21
1.59
2593--2718
43
3.0
43
83
6
150
54
4
19
21
1.62
2616--2718
22
4.8
22
78
9
106
55
5
15
23
1.62
2671--2704
7
4.9
7
85
0
50
55
2
23
17
1.55
2616--2718
43
2.4
43
91
1
154
55
5
15
23
1.62
7651--7700
11
4.5
11
77
5
55
78
0
18
4
0.91
7649--7700
23
2.2
23
89
3
77
78
0
17
3
0.89
12026--12074
20
2.4
21
86
10
66
55
0
2
42
1.11
12884--12932
20
2.4
21
86
10
66
55
0
2
42
1.11
16552--16625
29
2.6
29
89
2
105
14
10
29
44
1.80
20233--20304
30
2.4
31
83
6
103
47
9
18
25
1.78
20296--20369
22
3.4
23
83
9
86
52
5
20
21
1.66
20351--20656
55
5.6
55
95
0
513
50
7
16
25
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20899--21010
14
7.9
14
68
17
61
55
5
17
21
1.62
20877--21213
22
15.2
21
73
16
213
55
6
19
18
1.65
20845--21228
43
8.7
43
75
15
272
55
7
19
18
1.65
21095--21148
15
3.7
15
73
9
58
57
5
20
16
1.59
22102--22177
33
2.3
33
97
0
143
40
19
13
26
1.88
25391--25617
113
2.0
113
100
0
454
26
14
7
51
1.69
27301--27380
30
2.7
29
75
21
76
35
0
36
28
1.58
36145--36184
3
13.3
3
100
0
80
67
0
0
32
0.91
36248--36287
3
13.3
3
100
0
80
67
0
0
32
0.91
36065--36287
115
1.9
115
95
0
401
48
6
11
34
1.64
40580--40608
5
5.8
5
100
0
58
82
0
17
0
0.66
45076--45144
33
2.1
33
94
2
122
14
39
39
7
1.74

Tables:   1

The End!