Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013497.1 Corchorus capsularis cultivar CVL-1 contig13518, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30470

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1335--1378
11
4.0
11
88
8
54
43
0
2
54
1.12
3891--3960
34
2.0
35
88
2
106
40
27
7
25
1.82
4213--4379
21
8.0
21
79
10
173
25
14
22
37
1.93
4222--4379
41
3.8
42
88
5
207
24
14
24
37
1.92
4227--4379
62
2.5
61
80
8
175
24
15
23
36
1.93
7857--7897
20
2.0
22
85
9
59
19
9
9
60
1.55
8845--9094
30
8.6
30
69
20
156
38
27
13
20
1.90
8873--9094
60
3.8
60
80
10
260
39
28
12
20
1.88
8845--9094
116
2.1
116
88
4
378
38
27
13
20
1.90
22531--22563
2
16.5
2
100
0
66
51
0
0
48
1.00
23079--23113
3
11.3
3
93
6
61
65
0
0
34
0.93
30338--30396
4
14.2
4
82
7
73
72
1
22
3
1.08
30337--30396
17
3.6
17
84
8
70
73
1
21
3
1.07
30338--30394
21
2.7
21
91
0
87
73
1
21
3
1.07
30338--30396
25
2.4
25
85
5
75
72
1
22
3
1.08

Tables:   1

The End!