Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000135.1 Corchorus capsularis cultivar CVL-1 contig00135, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10880
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:3215 original size:7 final size:7

Alignment explanation


    Indices: 3205--3231  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       3195 ACTGGTAAAC

                   
       3205 TGGTGAA
          1 TGGTGAA

                   
       3212 TGGTGAA
          1 TGGTGAA

                   
       3219 TGGTGAA
          1 TGGTGAA

                  
       3226 TGGTGA
          1 TGGTGA

       3232 TGTGTGGGTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.26, C:0.00, G:0.44, T:0.30


Consensus pattern (7 bp):   
TGGTGAA

Done.