genome.fa.s13501.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013501.1 Corchorus capsularis cultivar CVL-1 contig13522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57316

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3395--3448	16	3.6	16	74	16	53	44	27	16	11	1.82
7075--7119	3	15.0	3	100	0	90	66	0	0	33	0.92
8217--8260	21	2.1	21	86	0	61	59	0	2	38	1.10
10221--10264	15	2.9	15	77	16	54	52	0	0	47	1.00
10221--10266	9	4.6	10	80	17	51	52	0	0	47	1.00
11639--11901	133	2.0	133	98	0	508	32	17	28	22	1.96
20309--20383	37	2.0	37	100	0	150	32	13	21	33	1.92
30503--30560	30	1.9	30	82	0	71	46	6	20	25	1.75
30590--30747	22	7.4	22	73	7	137	52	4	23	19	1.64
30683--30743	7	8.6	7	71	10	52	59	1	22	16	1.46
30793--30918	46	2.9	43	77	14	136	58	2	21	17	1.50
30817--30859	19	2.3	19	87	0	59	55	4	23	16	1.59
30682--31022	177	1.9	179	88	6	519	55	5	21	17	1.62
30936--31199	35	6.8	40	71	20	125	54	4	25	16	1.60
30867--31066	19	10.4	19	64	21	71	57	5	22	15	1.59
31029--31119	47	1.9	47	88	4	139	53	2	26	17	1.55
31005--31093	41	2.2	41	87	2	126	53	2	28	15	1.54
31087--31199	35	3.2	36	81	8	135	53	3	27	15	1.59
31087--31214	35	3.6	34	80	9	132	53	3	25	17	1.61
32808--32906	42	2.4	42	84	3	128	22	24	14	39	1.91
38649--38697	21	2.3	21	85	0	62	10	34	26	28	1.89
44924--44972	21	2.3	21	85	0	62	10	34	26	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56219--56304	19	4.5	19	92	0	136	41	23	5	29	1.77
56759--56808	24	2.0	24	88	7	73	16	18	2	64	1.39
56903--56971	21	3.2	22	82	10	72	20	24	5	49	1.71
56875--56943	36	1.9	37	85	8	99	20	24	7	47	1.75
57013--57057	14	3.3	14	78	3	56	17	22	4	55	1.60
57095--57131	17	2.2	17	90	0	56	29	13	8	48	1.71
57230--57316	34	2.7	31	89	8	122	14	20	4	59	1.53

Tables:   1

The End!