Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013503.1 Corchorus capsularis cultivar CVL-1 contig13524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44051

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16476--16557
22
3.7
22
75
8
69
43
4
21
29
1.73
16487--17173
72
9.2
71
70
19
324
45
4
20
29
1.71
16524--16656
50
2.7
50
84
4
169
47
3
20
29
1.65
16593--17103
44
12.3
43
68
21
187
45
4
20
29
1.72
16594--17173
58
9.5
57
73
17
329
45
5
20
29
1.72
16609--16692
22
3.8
22
82
6
107
44
3
19
33
1.68
16660--16728
36
1.9
36
81
0
84
43
2
20
33
1.67
16689--16790
22
4.6
22
81
11
102
46
3
22
27
1.69
16723--17132
66
6.6
60
76
15
227
45
5
20
28
1.74
16768--16898
22
5.9
22
81
8
149
45
6
19
29
1.74
16908--17053
22
6.6
22
79
7
154
45
4
19
30
1.71
17048--17132
22
3.9
22
87
6
118
47
7
17
28
1.74
16768--17132
44
8.6
43
75
16
268
45
6
19
29
1.74
17119--17178
24
2.5
24
86
5
86
43
5
21
30
1.74
17210--17309
8
11.6
8
73
17
76
47
4
21
28
1.68
17210--17272
25
2.5
25
100
0
126
46
4
20
28
1.71
17329--17359
16
1.9
16
93
0
53
41
3
29
25
1.71
25900--25929
13
2.2
14
94
5
53
3
13
0
83
0.77
36894--36938
22
2.0
23
87
12
67
22
2
4
71
1.15
40432--40468
19
1.9
19
100
0
74
27
35
27
10
1.90
40434--40478
19
2.4
19
88
0
63
28
35
22
13
1.92
40918--40960
23
1.9
22
90
4
68
67
0
23
9
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41442--41504
28
2.3
27
84
13
83
39
31
14
14
1.86
41455--41521
28
2.4
28
85
7
84
44
26
11
16
1.82
42338--42525
94
2.0
94
98
0
367
28
28
11
31
1.91

Tables:   1

The End!