Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001351.1 Corchorus capsularis cultivar CVL-1 contig01351, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7580
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:6943 original size:6 final size:6

Alignment explanation


    Indices: 6932--6958  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       6922 AACGATCACC

                                           
       6932 CAGAAA CAGAAA CAGAAA CAGAAA CAG
          1 CAGAAA CAGAAA CAGAAA CAGAAA CAG

       6959 TGTTTGCCGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.63, C:0.19, G:0.19, T:0.00


Consensus pattern (6 bp):   
CAGAAA

Done.