Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013513.1 Corchorus capsularis cultivar CVL-1 contig13534, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8717
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35


Found at i:2051 original size:13 final size:13

Alignment explanation


    Indices: 2033--2063  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       2023 TTGAAATTCC

                        *
       2033 AAATAATATTTAT
          1 AAATAATATTTAG

                         
       2046 AAATAATATTTAG
          1 AAATAATATTTAG

                 
       2059 AAATA
          1 AAATA

       2064 TTGAATAATA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39


Consensus pattern (13 bp):   
AAATAATATTTAG

Found at i:5669 original size:21 final size:20

Alignment explanation


    Indices: 5645--5687  Score: 50
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       5635 TTGCTTTAGA

                      *       *  
       5645 TTTAATTTACTTTGCTTTGTT
          1 TTTAATTTA-ATTGCTTTCTT

                *               
       5666 TTTAGTTTAATTGCTTTCTT
          1 TTTAATTTAATTGCTTTCTT

              
       5686 TT
          1 TT

       5688 AGTTGATAAT


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  20   11  0.58
  21    8  0.42

ACGTcount: A:0.14, C:0.09, G:0.09, T:0.67


Consensus pattern (20 bp):   
TTTAATTTAATTGCTTTCTT
Done.