Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013516.1 Corchorus capsularis cultivar CVL-1 contig13537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75880

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--34
2
17.0
2
100
0
68
50
0
0
50
1.00
226--480
44
6.0
43
79
7
261
38
25
10
25
1.88
226--472
41
5.8
43
81
7
263
39
25
10
24
1.88
226--472
84
2.9
84
86
4
309
39
25
10
24
1.88
8688--8748
24
2.5
24
78
0
68
3
31
8
57
1.44
12202--12259
30
1.9
31
86
10
84
31
17
25
25
1.97
15456--15503
21
2.3
22
79
13
57
6
27
8
58
1.51
18824--18863
21
1.9
21
85
10
55
22
30
7
40
1.81
21816--21855
20
2.0
21
95
5
73
22
42
0
35
1.54
26639--26670
2
16.0
2
100
0
64
0
0
50
50
1.00
27810--27843
15
2.3
15
94
0
59
20
23
17
38
1.93
29475--29505
15
2.1
15
93
0
53
16
35
29
19
1.93
33219--33526
157
2.0
157
98
0
598
42
13
13
30
1.84
37176--37224
6
7.4
7
93
6
61
77
14
6
2
1.05
37169--37217
6
7.7
6
93
6
71
79
16
4
0
0.88
37997--38089
46
2.0
46
93
0
159
39
17
18
24
1.91
44323--44406
42
2.0
42
85
0
114
36
17
16
28
1.92
44409--44492
30
2.8
30
98
0
159
36
20
21
21
1.95
45116--45274
79
2.0
79
92
0
264
36
13
13
37
1.83
50847--50912
33
1.9
35
87
6
100
56
15
12
16
1.68
55418--55458
20
2.0
21
85
4
57
58
7
14
19
1.59
62489--62529
20
2.0
21
85
4
57
58
7
14
19
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69171--69412
70
3.2
78
81
12
292
36
11
0
51
1.41
69187--69399
78
3.0
70
81
11
259
38
11
0
50
1.39
73870--73936
31
2.1
32
89
8
102
28
19
5
46
1.73
73962--74010
15
3.5
15
68
21
52
34
8
0
57
1.29
74140--74177
19
2.0
20
85
15
53
28
5
2
63
1.30
74343--74526
22
8.3
22
74
10
151
32
10
19
37
1.86
74557--74949
22
17.9
22
70
13
193
39
10
16
33
1.82
74804--74971
22
7.8
22
74
4
74
42
11
14
32
1.81
74986--75120
41
3.2
41
69
15
132
38
6
19
35
1.78
75051--75089
20
2.0
20
94
0
69
41
7
23
28
1.82
74979--75177
84
2.4
84
94
0
344
37
7
18
36
1.79
75135--75173
20
2.0
20
94
0
69
41
7
23
28
1.82
75161--75699
22
24.7
21
68
15
120
39
9
14
36
1.79
75145--75568
44
9.8
43
69
12
160
38
8
15
36
1.79
75330--75409
23
3.5
23
86
1
108
40
7
13
38
1.73
75483--75568
45
1.9
45
81
9
104
33
11
15
39
1.83
75594--75641
21
2.2
22
88
3
71
52
2
14
31
1.54

Tables:   1

The End!