Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013518.1 Corchorus capsularis cultivar CVL-1 contig13539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26844

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55--94
21
1.9
21
100
0
80
37
22
15
25
1.93
1--274
90
3.0
90
92
0
449
28
21
18
31
1.97
145--184
21
1.9
21
94
0
71
35
22
17
25
1.95
246--305
31
1.9
31
89
0
93
31
25
16
26
1.96
7483--7594
16
7.0
16
78
0
80
50
28
12
8
1.70
7492--7594
48
2.1
48
87
0
143
50
30
12
6
1.66
7492--7594
32
3.2
32
81
0
107
50
30
12
6
1.66
7750--7804
15
3.5
15
78
9
65
38
36
9
16
1.80
7743--7819
32
2.4
32
95
0
136
37
38
10
12
1.78
7759--7813
16
3.5
15
75
9
56
38
38
9
14
1.78
10304--10517
59
3.6
59
94
0
356
35
20
22
21
1.96
10324--10470
28
4.9
31
64
17
105
37
21
21
19
1.95
10310--10525
28
7.3
29
65
17
88
35
19
22
21
1.96
10333--10486
31
5.2
30
64
20
90
36
22
21
20
1.95
10535--10576
21
2.0
21
90
0
66
28
14
21
35
1.92
10812--10928
60
2.0
60
84
0
153
38
19
23
18
1.93
11197--11538
42
8.0
42
83
7
402
26
15
34
23
1.95
11827--11936
55
2.0
55
96
0
202
34
13
28
23
1.93
11929--12170
79
3.1
79
91
0
376
26
15
28
30
1.96
12169--12341
59
3.0
57
86
10
253
34
21
22
21
1.97
16904--16945
11
3.8
11
96
0
75
23
19
35
21
1.96
17058--17115
27
2.0
28
83
9
73
55
6
5
32
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22813--22846
15
2.3
15
94
0
59
52
2
5
38
1.41
22811--22848
15
2.4
16
82
13
51
52
2
5
39
1.38

Tables:   1

The End!