Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013519.1 Corchorus capsularis cultivar CVL-1 contig13540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23884

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
163--199
2
18.5
2
100
0
74
48
0
0
51
1.00
729--760
15
2.1
15
94
0
55
43
0
0
56
0.99
6335--6391
30
1.9
30
96
0
105
45
35
10
8
1.70
14326--14404
27
2.9
27
82
0
77
43
26
15
15
1.86
18183--18213
15
2.1
15
93
0
53
19
16
0
64
1.29
18168--18240
24
2.9
24
81
6
65
19
19
1
60
1.44
18194--18267
26
2.8
26
80
11
80
21
21
1
55
1.51
18225--18337
42
2.7
42
95
1
199
25
24
4
45
1.72
18770--18868
38
2.6
38
86
0
126
26
16
6
51
1.67
22492--22566
27
2.7
29
83
8
100
41
26
17
14
1.88
22517--22571
27
2.0
27
96
0
101
36
23
23
16
1.94
22661--22727
31
2.1
33
86
8
93
46
13
4
35
1.63

Tables:   1

The End!