Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001352.1 Corchorus capsularis cultivar CVL-1 contig01352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30


Found at i:285 original size:3 final size:3

Alignment explanation


    Indices: 277--303  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        267 TATTTTTTAA

                                               
        277 AAG AAG AAG AAG AAG AAG AAG AAG AAG
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG

        304 CTCCCATACC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (3 bp):   
AAG

Done.