Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013522.1 Corchorus capsularis cultivar CVL-1 contig13543, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24222

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7491--7585
7
14.0
7
68
10
63
17
25
2
54
1.54
7448--7598
34
4.4
34
85
7
173
19
24
1
54
1.54
7623--7689
21
3.1
22
74
6
66
26
17
4
50
1.65
7713--7962
34
7.6
34
73
15
202
17
23
3
55
1.57
7793--7980
7
28.1
7
68
18
98
15
23
3
56
1.54
7343--7837
256
1.9
256
93
1
850
21
21
4
52
1.64
7825--7849
12
2.1
12
100
0
50
16
32
0
52
1.44
7824--7978
19
7.8
19
71
12
98
16
22
2
58
1.50
7793--7930
46
3.0
46
92
1
222
15
24
2
57
1.52
7882--7964
35
2.4
34
88
4
121
16
20
3
59
1.52
7916--7945
15
2.0
15
93
0
51
16
16
0
66
1.25
7756--8006
127
2.0
126
89
2
387
16
24
2
56
1.53
7906--8005
46
2.1
48
83
5
123
17
21
3
59
1.51
7828--7994
27
6.3
25
70
16
99
16
22
2
58
1.49
8012--8217
20
10.0
21
74
15
139
18
20
4
56
1.60
8012--8214
41
5.0
42
78
11
199
18
20
4
55
1.61
8068--8179
14
8.4
13
70
14
59
22
20
1
55
1.53
8193--8237
15
3.0
15
83
0
63
17
13
8
60
1.58
8355--8563
53
3.9
53
96
0
382
16
20
7
55
1.64
8357--8568
26
8.0
26
82
9
259
16
19
8
55
1.65
14190--14218
15
1.9
15
100
0
58
48
13
17
20
1.81

Tables:   1

The End!