Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013524.1 Corchorus capsularis cultivar CVL-1 contig13545, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47939

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16--121
33
3.2
33
87
0
158
16
31
38
13
1.87
1322--1472
77
1.9
78
95
1
277
50
13
12
23
1.75
4687--4714
5
5.6
5
100
0
56
17
0
0
82
0.68
4676--4720
15
2.9
15
84
15
65
15
6
0
77
0.96
7601--7633
13
2.3
15
90
10
52
33
9
3
54
1.47
24775--24855
36
2.4
33
85
8
101
16
40
32
11
1.83
24894--24953
32
1.9
31
83
10
77
11
40
38
10
1.75
36577--36628
21
2.5
19
78
9
50
51
13
5
28
1.64
36692--36790
20
4.8
21
77
5
76
46
6
11
36
1.64
36692--36771
21
3.9
21
80
3
72
46
7
12
33
1.70
36989--39021
199
10.4
198
78
7
1937
34
13
17
34
1.90
39378--39428
15
3.5
15
82
17
63
60
0
9
29
1.28
39396--39420
12
2.1
12
100
0
50
68
0
0
32
0.90
39383--39435
27
2.0
25
89
7
79
64
0
5
30
1.17
40461--40508
21
2.3
21
85
7
62
27
10
6
56
1.57
40613--40646
17
2.0
17
100
0
68
41
5
5
47
1.52
40606--40657
23
2.3
22
80
9
59
40
9
5
44
1.61
41300--41370
37
1.9
36
97
2
133
38
9
12
39
1.77
42863--43019
74
2.1
74
93
0
269
21
27
9
42
1.83
44177--44202
10
2.6
10
100
0
52
38
23
7
30
1.83
45196--45238
12
3.5
12
93
6
77
25
23
16
34
1.95

Tables:   1

The End!