Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013525.1 Corchorus capsularis cultivar CVL-1 contig13546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33559

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28--110
33
2.5
32
80
5
94
10
32
44
12
1.76
141--182
14
2.7
15
82
14
50
52
4
26
16
1.63
3010--3106
31
3.2
31
73
14
94
22
28
11
37
1.89
5394--5424
2
15.5
2
100
0
62
51
0
0
48
1.00
7910--7943
17
2.0
17
88
0
50
50
2
29
17
1.61
8000--8034
12
2.9
12
82
0
52
57
11
17
14
1.66
14983--15595
22
28.8
20
69
21
219
21
21
6
51
1.69
15066--15599
22
25.4
22
76
14
513
20
20
5
52
1.67
15037--15107
29
2.4
31
84
9
87
22
21
2
53
1.59
15066--15599
209
2.6
208
96
0
1005
20
20
5
52
1.67
15439--15548
15
7.5
15
67
19
70
19
20
5
55
1.62
16550--16591
20
2.2
19
83
12
50
21
4
0
73
1.01
18721--18791
23
3.0
23
77
4
70
23
4
7
64
1.36
31746--31855
54
2.0
54
96
0
202
20
25
14
40
1.90

Tables:   1

The End!