Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013531.1 Corchorus capsularis cultivar CVL-1 contig13552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5818

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
965--1027
22
2.9
22
79
13
76
41
15
9
33
1.80
1378--1845
22
21.6
22
68
11
168
35
14
9
40
1.79
1467--1638
23
7.7
23
71
11
99
38
15
10
34
1.82
1564--1660
46
2.2
44
81
5
113
37
15
8
39
1.77
1604--1721
60
2.0
61
84
5
159
35
13
7
43
1.73
1794--1845
20
2.6
20
93
0
86
28
17
9
44
1.80
1926--2197
22
12.5
22
73
12
143
32
15
10
41
1.80
2203--2342
22
6.4
21
69
14
79
35
18
9
36
1.83
2378--2560
22
8.3
22
74
12
135
39
18
9
33
1.82
2726--2763
19
2.0
20
85
15
53
63
2
5
28
1.30
3879--3905
6
4.5
6
100
0
54
55
14
0
29
1.40
3902--3936
13
2.7
13
90
0
52
62
8
8
20
1.49
4846--4870
10
2.5
10
100
0
50
24
8
20
48
1.76
5440--5478
20
2.0
20
84
0
51
66
10
7
15
1.43

Tables:   1

The End!