Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013532.1 Corchorus capsularis cultivar CVL-1 contig13553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6558
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30


Found at i:4493 original size:2 final size:2

Alignment explanation


    Indices: 4486--4516  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       4476 TTAATATTTA

                                                          
       4486 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4517 CACTAAATCT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.