Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013535.1 Corchorus capsularis cultivar CVL-1 contig13556, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13201
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:710 original size:19 final size:19

Alignment explanation


    Indices: 669--712  Score: 54
    Period size: 19  Copynumber: 2.3  Consensus size: 19

        659 TTGCCCATCT

                              *
        669 TCTCTCTACCCCCACTAAG
          1 TCTCTCTACCCCCACTAAC

                             *  
        688 TCTCTCT-CCTCCCACTTAC
          1 TCTCTCTACC-CCCACTAAC

                  
        707 TCTCTC
          1 TCTCTC

        713 ATAGTCAATA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  18    2  0.09
  19   20  0.91

ACGTcount: A:0.14, C:0.50, G:0.02, T:0.34


Consensus pattern (19 bp):   
TCTCTCTACCCCCACTAAC

Found at i:1094 original size:18 final size:16

Alignment explanation


    Indices: 1063--1098  Score: 54
    Period size: 18  Copynumber: 2.1  Consensus size: 16

       1053 AATAGATATT

                            
       1063 AATATTAATAATAATA
          1 AATATTAATAATAATA

                              
       1079 AATATTTAATTAATAATA
          1 AATA-TTAA-TAATAATA

              
       1097 AA
          1 AA

       1099 ATGGAGTGAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  16    4  0.22
  17    4  0.22
  18   10  0.56

ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39


Consensus pattern (16 bp):   
AATATTAATAATAATA
Done.