Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013536.1 Corchorus capsularis cultivar CVL-1 contig13557, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169640

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
276--571
109
2.7
109
90
4
441
49
1
11
37
1.49
663--705
2
21.0
2
85
4
59
48
2
4
44
1.36
1037--1086
25
2.0
25
88
3
75
66
12
8
14
1.45
7640--7673
2
17.0
2
88
11
52
47
2
0
50
1.16
7977--8012
14
2.6
14
95
4
65
33
0
16
50
1.46
17746--17782
2
18.5
2
100
0
74
48
0
0
51
1.00
21738--21843
22
4.9
22
77
9
94
37
18
8
34
1.82
21742--21874
22
6.0
22
74
11
85
40
17
8
33
1.79
21938--21979
22
1.9
22
90
0
66
38
16
11
33
1.86
22052--22106
22
2.5
23
82
8
69
40
9
7
43
1.64
22071--22127
22
2.6
22
88
0
78
38
14
10
36
1.80
23899--23935
17
2.2
17
90
0
56
24
35
13
27
1.93
25033--25089
30
1.9
30
85
7
80
47
17
10
24
1.79
34480--34520
2
20.5
2
100
0
82
0
0
51
48
1.00
39815--39864
15
3.1
16
81
18
68
34
0
6
60
1.21
39912--39936
2
12.5
2
100
0
50
48
0
0
52
1.00
41822--41855
13
2.6
13
90
0
50
20
0
2
76
0.92
53875--53911
16
2.3
16
90
0
56
40
18
21
18
1.91
58522--58561
19
2.2
19
95
4
73
40
2
5
52
1.37
63788--63858
24
3.0
24
82
0
79
0
50
0
49
1.00
63788--63855
9
7.6
9
79
12
50
0
50
0
50
1.00
63788--63858
12
6.2
12
83
8
67
0
50
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63788--63843
12
4.7
12
88
0
76
0
50
0
50
1.00
65333--65369
7
5.4
7
90
3
58
13
0
62
24
1.31
72407--72434
14
2.0
14
100
0
56
35
14
21
28
1.92
77150--77185
11
3.3
11
92
7
56
47
5
2
44
1.41
78312--78346
10
3.3
10
92
8
52
85
14
0
0
0.59
78664--78692
2
14.5
2
100
0
58
48
0
0
51
1.00
82247--82409
60
2.7
60
88
2
247
28
19
19
33
1.95
82249--82413
31
5.5
30
69
16
108
28
19
18
33
1.96
90041--90081
10
4.0
10
81
6
55
0
24
0
75
0.80
92566--92649
28
2.9
28
82
3
87
15
23
23
36
1.93
93308--93354
23
2.0
23
91
0
76
57
31
2
8
1.41
94800--94837
11
3.5
11
85
10
51
57
2
0
39
1.12
102967--103012
21
2.2
21
84
7
58
45
4
34
15
1.66
103321--103382
18
3.5
17
76
8
61
11
16
11
61
1.57
112087--112128
21
2.0
21
95
0
75
33
7
4
54
1.49
113041--113230
96
2.0
94
95
2
344
38
22
17
21
1.93
120353--120390
18
2.1
18
90
9
60
21
5
63
10
1.46
124359--124423
23
2.9
22
79
4
67
40
15
12
32
1.84
124316--124422
22
4.8
22
75
6
72
36
16
13
33
1.88
124476--124524
22
2.3
21
82
6
62
38
14
12
34
1.83
124507--124576
23
3.0
23
85
0
95
41
17
4
37
1.69
124603--124767
22
7.5
21
69
13
109
36
13
9
40
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124607--124766
44
3.6
42
76
9
133
35
14
10
40
1.79
124758--124824
19
3.5
19
89
2
98
23
19
11
44
1.84
124930--125112
22
8.4
22
72
15
139
34
13
9
43
1.76
124906--125053
44
3.4
44
75
14
144
33
12
10
43
1.75
124930--125112
66
2.8
63
77
10
174
34
13
9
43
1.76
125179--125254
22
3.5
21
69
15
57
32
18
10
38
1.85
125331--125517
22
8.4
22
77
8
146
37
17
11
33
1.86
125793--125859
32
2.1
33
83
10
86
50
2
14
31
1.58
133169--133218
25
2.0
25
100
0
100
20
16
28
36
1.93
134402--134449
21
2.4
20
80
16
55
54
4
2
39
1.32
139484--139608
63
2.0
62
93
1
214
28
8
22
40
1.82
144907--144940
12
2.8
12
81
0
50
20
0
2
76
0.92
150019--150074
29
1.9
29
100
0
112
32
21
3
42
1.70
161357--161391
18
1.9
18
94
0
61
51
11
8
28
1.67
162279--162336
28
2.1
28
96
0
107
46
17
15
20
1.84
163033--163074
2
22.0
2
90
9
70
52
0
0
47
1.00
163326--163383
22
2.6
22
81
5
73
44
0
3
51
1.18
163883--163932
23
2.2
23
89
3
75
14
34
6
46
1.69
164198--164806
203
3.0
203
85
5
863
42
16
25
15
1.87
168733--168767
11
3.2
11
91
0
61
80
17
2
0
0.84

Tables:   1

The End!