genome.fa.s13537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013537.1 Corchorus capsularis cultivar CVL-1 contig13558, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115346

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2549--2622	22	3.5	22	77	14	68	29	8	12	50	1.68
2700--2753	27	2.0	27	85	0	72	48	7	11	33	1.67
2674--2786	23	4.9	22	73	17	77	39	9	14	36	1.79
2607--2789	22	8.1	22	65	18	81	39	8	15	36	1.78
7089--7164	31	2.5	31	88	0	107	31	23	28	15	1.96
7150--7200	24	2.1	24	88	0	75	31	25	27	15	1.96
7893--7918	12	2.2	12	100	0	52	34	0	0	65	0.93
11119--11431	140	2.2	139	90	1	484	42	10	9	37	1.73
18898--19008	54	2.1	54	96	0	204	52	22	2	22	1.60
19039--19174	68	2.0	68	98	0	263	50	5	13	29	1.65
23964--23993	14	2.1	14	93	0	51	10	20	16	53	1.71
36360--36414	26	2.2	24	78	12	65	25	12	30	30	1.93
36367--36418	26	2.0	26	92	0	86	26	13	26	32	1.94
36890--36958	34	2.0	34	100	0	138	28	20	27	23	1.99
37888--37927	19	2.1	19	90	0	62	12	50	5	32	1.62
38337--38479	31	4.6	31	81	5	153	37	22	20	19	1.95
38337--38490	63	2.5	62	81	3	166	37	22	21	18	1.95
38395--38515	63	1.9	62	81	5	145	38	23	19	19	1.93
38481--38546	31	2.2	29	84	7	80	34	24	22	18	1.96
38989--39027	10	3.9	10	89	0	60	43	20	5	30	1.73
38989--39027	20	2.0	20	100	0	78	43	20	5	30	1.73
40043--40097	12	4.5	12	95	4	101	25	23	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40043--40097	25	2.2	24	96	3	101	25	23	16	34	1.95
55381--55424	16	2.6	17	75	7	54	43	0	9	47	1.35
56289--56364	22	3.5	22	76	3	73	31	14	7	46	1.73
61315--61369	25	2.2	25	100	0	110	32	16	34	16	1.91
81390--81449	23	2.8	21	83	11	86	45	8	10	36	1.68
88463--88598	31	4.4	31	84	0	166	16	23	26	33	1.96
93640--93670	14	2.2	14	94	0	53	3	0	87	9	0.66
110131--110157	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1

The End!