Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013539.1 Corchorus capsularis cultivar CVL-1 contig13560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95406

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2440--2502
32
2.0
32
90
0
99
22
15
4
57
1.57
20468--20499
2
16.0
2
93
0
55
46
0
0
53
1.00
21217--21254
11
3.5
11
89
10
51
39
0
2
57
1.12
22772--22806
16
2.2
16
100
0
70
45
17
25
11
1.81
22855--23074
91
2.4
91
90
3
336
35
13
19
30
1.91
59291--59320
15
2.0
15
93
0
51
40
10
6
43
1.64
61100--61135
19
1.9
19
88
5
56
30
2
5
61
1.33
63144--63173
15
2.0
15
100
0
60
40
13
13
33
1.83
64183--64217
6
6.0
6
93
6
63
0
17
0
82
0.66
64183--64214
11
2.8
11
95
4
55
0
15
0
84
0.63
64181--64217
17
2.2
17
100
0
74
0
18
0
81
0.70
67220--67252
16
2.1
16
94
0
57
9
18
33
39
1.82
70826--70876
25
2.0
25
92
0
84
33
21
15
29
1.94
87245--87323
38
2.1
38
100
0
158
56
8
10
24
1.60
89836--89902
31
2.1
32
88
2
100
28
20
2
47
1.65
90107--90418
171
1.8
167
85
8
434
36
10
9
43
1.72
90763--90811
22
2.2
21
82
10
62
48
4
14
32
1.62
93441--93501
31
2.0
30
83
6
77
60
11
18
9
1.57

Tables:   1

The End!