Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013543.1 Corchorus capsularis cultivar CVL-1 contig13564, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10034

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5214--5252
19
2.1
19
85
0
51
79
0
17
2
0.84
5261--5404
45
3.2
44
85
5
191
34
7
20
37
1.81
5261--5404
44
3.2
43
85
5
180
34
7
20
37
1.81
6173--6218
19
2.3
19
92
7
74
80
0
19
0
0.71
6173--6218
7
6.9
7
87
5
60
80
0
19
0
0.71
6173--6218
6
7.0
6
83
16
56
80
0
19
0
0.71
7247--7417
35
5.0
35
76
12
124
19
18
19
42
1.89
7441--7543
52
2.0
53
82
5
129
19
14
23
42
1.88
7493--8094
70
8.5
70
85
2
733
22
18
20
38
1.93
7493--8082
142
4.2
141
85
3
790
22
17
20
38
1.93
8144--8219
40
1.9
40
86
0
107
25
17
15
42
1.88
8250--8851
58
9.9
61
81
9
252
23
19
15
40
1.90
8440--8843
58
6.9
58
79
10
426
22
20
15
41
1.90
8308--8843
123
4.4
121
82
11
561
22
20
16
40
1.90
8308--8776
181
2.6
180
84
9
542
22
19
16
41
1.90
8308--8833
58
8.7
57
82
7
369
23
20
16
40
1.91

Tables:   1

The End!