Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001355.1 Corchorus capsularis cultivar CVL-1 contig01355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.33


Found at i:409 original size:14 final size:13

Alignment explanation


    Indices: 381--405  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        371 AAAGTGATAC

                         
        381 AATACAAAAATAG
          1 AATACAAAAATAG

                        
        394 AATACAAAAATA
          1 AATACAAAAATA

        406 AGAACCGAGT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.72, C:0.08, G:0.04, T:0.16


Consensus pattern (13 bp):   
AATACAAAAATAG

Found at i:466 original size:18 final size:17

Alignment explanation


    Indices: 429--463  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        419 TTGTTTTTGT

                         *   
        429 AGTCTATCTAAAAGAAA
          1 AGTCTATCTAAAAAAAA

                             
        446 AGTCTATCTAAAAAAAA
          1 AGTCTATCTAAAAAAAA

             
        463 A
          1 A

        464 AGTAGGAGAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.57, C:0.11, G:0.09, T:0.23


Consensus pattern (17 bp):   
AGTCTATCTAAAAAAAA
Done.