Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013550.1 Corchorus capsularis cultivar CVL-1 contig13571, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19044

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
917--1004
45
2.0
45
88
4
133
34
18
22
25
1.96
1919--2008
45
2.0
45
93
0
153
31
18
24
25
1.98
2393--2432
2
20.5
2
84
5
55
57
0
0
42
0.98
2460--2941
166
2.9
165
82
3
619
29
15
16
39
1.89
3094--3127
17
2.0
17
100
0
68
41
0
11
47
1.40
5967--6004
11
3.5
11
85
10
51
57
2
0
39
1.12
6585--6664
21
3.5
24
85
13
114
33
23
0
42
1.55
6674--6741
26
2.6
26
97
0
127
54
11
0
33
1.37
6674--6745
11
5.4
15
69
25
63
55
12
0
31
1.37
6675--6794
52
2.4
49
74
18
113
54
10
1
33
1.45
6798--6828
11
2.7
11
95
5
53
77
0
3
19
0.90
6795--6829
12
2.8
13
87
12
56
74
0
2
22
0.95
7053--7095
20
2.2
20
87
8
61
37
9
34
18
1.83
7274--7317
19
2.3
19
92
0
70
11
50
2
36
1.51
7567--7599
16
2.1
16
100
0
66
27
0
6
66
1.15
8226--8263
11
3.5
11
89
10
51
39
0
2
57
1.12
10844--10903
22
2.7
23
84
5
79
60
6
0
33
1.23
10934--11033
32
3.1
32
86
0
128
17
35
30
18
1.93

Tables:   1

The End!