Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013553.1 Corchorus capsularis cultivar CVL-1 contig13574, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53407

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--83
2
41.0
2
100
0
164
0
50
0
50
1.00
4978--5066
47
1.9
46
83
2
115
28
10
13
48
1.75
8105--8129
2
12.5
2
100
0
50
48
0
0
52
1.00
9868--9900
17
1.9
17
93
0
57
21
12
21
45
1.84
10216--10276
30
2.0
30
96
0
113
40
18
16
24
1.90
13135--13168
13
2.5
13
95
4
59
55
2
0
41
1.15
14755--14941
94
2.0
94
88
2
277
42
11
20
25
1.86
16787--16823
18
2.1
18
94
0
65
48
5
13
32
1.65
21453--21528
37
2.1
37
94
0
134
32
7
26
32
1.85
21521--21576
26
2.2
25
78
12
60
21
8
12
57
1.62
21532--21575
13
3.5
13
93
3
72
18
6
13
61
1.54
22919--23003
27
3.0
29
86
6
129
42
11
8
37
1.72
25465--25829
22
16.7
22
72
18
134
18
19
6
55
1.65
25476--25813
43
7.7
42
78
10
281
18
19
6
55
1.64
25542--25595
15
3.7
15
73
9
58
16
20
5
57
1.59
26052--26256
54
3.8
54
83
9
260
25
16
6
52
1.67
26052--26256
107
1.9
109
92
2
351
25
16
6
52
1.67
26240--26301
22
2.8
22
85
4
81
19
24
8
48
1.75
26293--26352
30
2.0
31
93
3
104
28
16
6
48
1.71
26306--26384
30
2.7
30
78
3
81
24
20
10
45
1.81
32724--32808
27
3.0
29
89
6
138
43
11
7
37
1.69
32722--32802
29
2.9
27
91
7
135
41
11
7
39
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33704--33821
22
5.4
22
78
13
102
40
9
13
36
1.77
33717--33955
22
10.8
22
73
12
102
41
10
13
34
1.78
34037--34088
20
2.6
20
96
0
95
44
13
15
26
1.84
39802--39837
19
1.9
18
88
5
54
41
2
22
33
1.68
41118--41151
16
2.2
16
89
5
52
32
2
5
58
1.37
43588--43647
20
3.1
19
78
11
68
58
23
6
11
1.57
48667--48804
48
2.9
46
81
9
143
48
6
18
26
1.72
49102--49165
27
2.3
27
92
7
103
56
7
28
7
1.56
50132--50193
30
2.1
30
96
0
115
43
6
0
50
1.28
53355--53386
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!