Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013554.1 Corchorus capsularis cultivar CVL-1 contig13575, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48188

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
746--778
16
2.1
16
88
11
50
6
0
21
72
1.05
1257--1344
45
2.0
45
90
4
142
34
18
22
25
1.96
3676--3741
31
2.1
31
88
5
98
28
19
4
46
1.69
3982--4020
19
2.0
20
85
14
55
33
2
2
61
1.23
4192--4301
22
4.9
22
77
12
100
34
10
17
37
1.85
4466--4772
22
13.8
21
69
17
108
40
8
15
34
1.78
4881--4928
19
2.5
20
82
6
62
47
6
20
25
1.73
4916--5477
22
25.7
22
67
15
148
39
10
14
35
1.81
5084--5190
45
2.4
44
78
10
117
39
9
15
35
1.80
5492--5535
22
2.0
22
86
8
63
43
4
11
40
1.61
8627--8670
19
2.3
19
84
11
54
45
0
13
40
1.44
9054--9094
18
2.3
18
91
0
64
41
0
12
46
1.41
9841--9877
19
2.0
19
89
5
58
64
0
0
35
0.94
14279--14331
21
2.4
23
81
15
67
33
1
0
64
1.05
18089--18177
15
5.9
15
66
23
53
43
4
1
50
1.29
23244--23354
43
2.6
42
80
7
109
20
9
34
35
1.86
32050--32085
18
2.1
18
89
5
56
16
13
25
44
1.85
36059--36087
2
14.5
2
100
0
58
51
0
0
48
1.00
38399--38424
11
2.4
11
100
0
52
26
19
7
46
1.77
46402--46466
29
2.2
28
82
15
78
32
10
27
29
1.90

Tables:   1

The End!