Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013555.1 Corchorus capsularis cultivar CVL-1 contig13576, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49385

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
864--956
31
3.1
31
84
7
113
36
15
9
38
1.80
968--1040
30
2.4
30
90
0
110
27
20
28
23
1.99
1084--1163
29
2.7
30
86
3
108
41
12
18
27
1.87
1759--1876
59
2.0
59
96
1
220
30
10
11
48
1.72
1874--1906
2
16.5
2
100
0
66
0
0
48
51
1.00
9461--9502
12
3.3
12
90
6
57
45
14
7
33
1.72
14276--16258
35
57.9
35
77
8
1650
33
18
10
37
1.85
15023--15083
18
3.4
18
65
13
54
32
16
9
40
1.81
15948--16008
18
3.4
18
65
13
54
32
16
9
40
1.81
14276--16258
136
14.5
135
84
8
1440
33
18
10
37
1.85
37792--37947
78
2.0
78
88
2
233
32
19
25
23
1.98
45561--45702
33
4.3
33
93
0
239
45
16
10
26
1.80
45591--45735
66
2.2
66
85
2
193
44
18
11
26
1.83
45728--45832
33
3.2
33
79
2
122
45
20
8
24
1.79

Tables:   1

The End!