Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013563.1 Corchorus capsularis cultivar CVL-1 contig13584, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33839

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
466--504
17
2.3
17
86
8
53
5
12
0
82
0.83
1072--1141
30
2.3
31
80
7
81
32
27
14
25
1.94
2463--2501
16
2.4
16
86
4
51
5
12
0
82
0.83
2541--2582
15
2.7
15
88
3
57
42
0
2
54
1.13
11056--11124
34
2.0
34
94
0
120
46
13
18
21
1.83
13685--13715
7
4.6
7
92
8
55
87
12
0
0
0.55
13685--13721
14
2.7
13
88
12
56
86
13
0
0
0.57
13688--13725
18
2.2
17
90
4
58
86
13
0
0
0.56
18063--18200
22
6.3
22
75
12
115
37
8
14
39
1.77
18292--18397
2
53.0
2
73
7
63
50
1
5
42
1.37
19895--19927
2
16.5
2
87
12
50
48
3
0
48
1.17
24211--24273
26
2.5
25
79
7
65
42
4
4
47
1.45
24267--24307
20
2.0
21
85
9
57
48
2
2
46
1.28
24902--24942
19
2.2
19
86
8
57
12
7
21
58
1.58
26595--26620
2
13.0
2
100
0
52
50
0
0
50
1.00
28012--28063
27
1.9
27
84
0
68
32
34
1
30
1.69
28277--28313
19
2.0
19
89
5
58
64
0
2
32
1.07
28529--28574
15
2.9
15
81
9
56
34
0
10
54
1.36

Tables:   1

The End!