genome.fa.s13571.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013571.1 Corchorus capsularis cultivar CVL-1 contig13592, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43219

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5053--5079	6	4.5	6	100	0	54	29	0	14	55	1.40
5568--5759	31	5.6	30	64	24	78	45	6	21	25	1.76
5509--5778	71	3.8	71	96	0	495	42	8	22	25	1.82
5825--6039	37	5.6	38	79	8	204	46	13	15	23	1.82
5825--5982	75	2.1	75	95	0	280	46	12	17	23	1.82
6159--6233	11	6.8	11	73	0	60	48	13	18	20	1.81
6236--6649	35	11.7	35	85	6	516	42	10	21	25	1.84
6235--6673	143	3.1	143	89	4	631	43	10	20	25	1.83
6236--6649	106	3.9	104	87	6	600	42	10	21	25	1.84
6663--6773	36	3.2	34	72	21	106	46	6	18	28	1.73
22736--22820	30	2.7	31	81	15	88	17	24	16	41	1.90
22771--22823	15	3.5	15	89	0	61	15	24	18	41	1.89
26330--26360	2	15.0	2	93	6	53	48	0	3	48	1.17
28588--28654	34	2.0	34	81	0	80	40	7	7	44	1.61
29043--29071	2	15.0	2	92	7	51	51	0	0	48	1.00
30073--30187	36	3.2	35	83	13	153	28	19	10	41	1.84
30788--30827	15	2.5	17	88	11	59	10	77	0	12	0.99
30920--31050	35	3.7	36	82	5	115	22	15	13	48	1.79
31043--31662	41	15.9	41	87	6	805	22	18	11	47	1.80
31043--31674	119	5.4	118	87	7	864	22	18	11	47	1.81
31026--31674	160	4.2	152	86	6	826	22	18	11	47	1.81
30974--31805	78	10.9	71	78	13	232	22	17	11	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31646--31784	36	3.9	35	76	10	113	25	15	10	48	1.77
31640--31816	70	2.4	72	76	14	173	24	15	11	48	1.78
31753--32207	41	11.1	41	86	2	423	25	16	11	46	1.80
31824--32207	82	4.7	82	88	0	579	25	15	11	46	1.81
31824--32207	165	2.3	164	93	0	669	25	15	11	46	1.81
33497--33526	16	1.9	15	93	6	51	3	16	0	80	0.85
36550--36589	21	1.9	21	85	10	55	22	27	7	42	1.80
41835--41904	28	2.5	28	83	4	79	14	15	27	42	1.86
42225--42280	25	2.2	25	80	6	58	32	5	16	46	1.69

Tables:   1

The End!