Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013573.1 Corchorus capsularis cultivar CVL-1 contig13594, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33449

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1206--1263
29
2.0
29
93
3
100
27
10
12
50
1.72
1212--1271
29
2.1
29
87
6
86
25
11
10
53
1.68
4078--4102
7
3.6
7
100
0
50
64
12
0
24
1.27
8966--9003
11
3.5
11
85
10
51
57
2
0
39
1.12
10171--10199
6
5.0
6
95
4
51
0
0
13
86
0.58
16404--16445
2
20.5
2
90
4
66
47
4
0
47
1.23
16512--16563
28
1.9
27
85
14
72
48
7
0
44
1.31
17225--17263
11
3.5
11
93
6
62
20
25
28
25
1.99
17263--17324
29
2.2
29
82
5
74
37
4
3
54
1.38
19699--19797
49
2.0
49
98
0
189
35
16
4
44
1.66
21037--21078
19
2.2
19
83
8
50
33
4
40
21
1.74
23236--23260
9
2.8
9
100
0
50
48
0
8
44
1.32
23448--23503
22
2.5
23
82
5
71
35
8
16
39
1.80
23551--23791
22
10.8
22
70
13
143
38
9
17
34
1.83
23557--23610
27
2.0
27
89
7
83
48
7
11
33
1.67
23754--23817
22
2.9
23
79
6
60
43
7
14
34
1.74
23937--23981
22
2.0
22
86
0
63
33
8
15
42
1.78
24049--24121
22
3.4
22
73
1
76
41
5
16
36
1.72
24225--24384
63
2.5
64
76
11
150
40
6
16
37
1.74
24414--24521
46
2.4
45
82
3
137
34
13
15
36
1.88
24158--24561
44
9.3
43
72
11
184
35
8
17
38
1.81
24158--24561
22
18.5
22
66
15
119
35
8
17
38
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24650--24716
22
3.1
21
74
19
59
43
8
10
37
1.71
24782--24820
2
20.5
2
89
10
64
46
0
0
53
1.00
32827--32853
6
4.5
6
100
0
54
55
14
0
29
1.40
32858--32895
12
3.1
12
92
3
58
65
7
2
23
1.32

Tables:   1

The End!