Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013583.1 Corchorus capsularis cultivar CVL-1 contig13604, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9248

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
709--801
44
2.1
44
85
0
132
43
23
10
22
1.85
4806--5391
35
16.3
35
80
8
450
37
16
7
38
1.77
4832--4889
16
3.4
16
68
13
53
36
13
6
43
1.71
4922--4980
16
3.5
16
71
13
55
37
16
6
38
1.76
4896--4943
21
2.3
21
92
0
78
39
12
2
45
1.54
4832--5090
91
2.8
91
91
0
419
37
16
7
38
1.77
4806--5174
126
2.9
126
75
8
399
37
17
7
38
1.77
5008--5071
16
3.8
16
72
11
56
37
17
4
40
1.70
4960--5069
56
2.0
56
90
3
177
37
17
6
39
1.75
5014--5490
147
3.4
142
73
17
424
36
17
7
38
1.78
5218--5286
21
3.3
21
89
4
104
37
13
4
44
1.63
4810--5391
126
4.6
125
69
12
393
37
16
7
38
1.77
5398--5484
43
2.0
43
100
0
174
36
19
6
36
1.79
5345--5535
99
1.9
99
96
0
355
37
17
5
39
1.73
4925--5436
126
4.1
122
76
13
416
36
17
8
38
1.79
5436--5562
56
2.3
56
87
5
193
36
17
5
40
1.73
8644--8806
55
3.0
54
96
1
299
31
7
15
45
1.73

Tables:   1

The End!