Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013587.1 Corchorus capsularis cultivar CVL-1 contig13608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52122

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
384--442
29
2.0
30
90
3
93
23
20
11
44
1.85
2216--2415
100
2.0
100
96
0
364
44
11
14
30
1.80
4198--4263
31
2.1
31
88
5
98
27
19
4
48
1.68
4541--4578
19
2.0
20
85
15
53
28
5
2
63
1.30
4800--4929
22
5.9
22
73
10
95
34
7
20
36
1.82
5159--5717
22
25.7
22
67
12
176
38
10
13
36
1.80
5159--5717
44
12.8
44
68
13
203
38
10
13
36
1.80
5790--5840
25
2.0
25
100
0
102
29
27
19
23
1.98
5875--5904
2
15.0
2
100
0
60
50
0
0
50
1.00
14400--14557
83
1.9
82
94
1
280
38
18
16
25
1.92
14802--14899
35
2.8
35
87
0
151
24
22
16
36
1.94
16364--16464
33
3.0
34
85
10
136
27
19
18
33
1.96
16497--16569
32
2.2
33
92
2
121
47
2
28
20
1.64
17709--17805
50
1.9
51
95
2
178
36
14
9
40
1.78
20216--20276
24
2.3
26
81
16
81
34
1
29
34
1.68
21644--21686
19
2.2
18
84
12
50
53
9
0
37
1.33
21180--22511
486
2.8
486
93
3
2248
34
12
12
40
1.81
24013--24070
12
4.6
12
75
10
53
58
0
0
41
0.98
24006--24069
24
2.5
27
87
10
98
59
0
0
40
0.97
30322--30364
21
2.1
20
82
4
50
67
9
9
13
1.42
33176--33362
93
2.0
90
88
3
275
36
14
28
20
1.92
34932--34985
26
2.1
26
100
0
108
22
3
11
62
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36445--36471
7
3.9
7
100
0
54
25
14
14
44
1.84
41408--41433
6
4.3
6
100
0
52
0
15
30
53
1.42
42596--42633
15
2.6
14
88
8
58
15
7
28
47
1.74
43655--43744
39
2.3
39
86
0
135
42
38
15
3
1.64
45852--45939
43
2.0
43
91
0
140
22
20
6
50
1.72
46509--46559
17
3.0
17
71
21
52
54
1
3
39
1.30
46331--46741
214
2.0
208
94
4
729
42
11
9
36
1.74
49562--49605
20
2.2
20
87
0
61
29
4
36
29
1.77
50678--50785
22
4.5
22
72
21
74
68
1
20
9
1.27
50694--50802
29
3.9
29
68
18
88
68
1
20
9
1.26
50661--50785
25
5.0
24
72
22
107
68
1
20
10
1.28
50661--50801
53
2.8
50
85
11
189
68
1
21
9
1.26
50778--50816
16
2.4
17
82
8
53
66
0
33
0
0.92

Tables:   1

The End!