Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013588.1 Corchorus capsularis cultivar CVL-1 contig13609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73671

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2414--2464
17
3.1
16
86
8
66
21
19
21
37
1.95
5584--5633
26
1.9
26
95
0
91
30
16
34
20
1.94
8821--8881
28
2.2
27
85
2
77
40
4
3
50
1.40
8967--9011
18
2.4
18
81
7
54
55
8
0
35
1.31
9599--9680
42
1.9
42
82
7
103
48
3
7
40
1.48
10770--10915
70
2.1
71
93
1
249
50
1
12
35
1.48
11571--11697
33
3.9
31
73
17
98
13
31
42
12
1.81
11658--11752
33
2.9
33
83
7
122
10
38
36
13
1.80
11826--12017
33
5.9
33
88
2
239
12
32
40
14
1.83
18449--18550
14
7.2
14
83
5
125
68
14
5
10
1.37
18449--18550
29
3.6
28
88
5
143
68
14
5
10
1.37
18449--18550
43
2.4
42
90
1
150
68
14
5
10
1.37
19949--19984
19
1.9
19
94
5
65
80
5
5
8
1.01
28330--28365
17
2.1
17
94
0
63
33
0
25
41
1.55
29433--29475
2
23.5
2
82
17
58
44
0
0
55
0.99
29430--29475
9
5.3
9
82
17
62
43
0
0
56
0.99
29415--29473
23
2.5
24
91
5
93
42
0
3
54
1.17
30062--30136
30
2.5
31
84
6
100
28
26
17
28
1.98
31461--31505
16
2.8
16
77
12
56
15
8
33
42
1.78
31455--31561
32
3.3
32
85
0
142
14
9
36
39
1.79
31694--31732
20
2.0
20
85
10
53
35
5
5
53
1.45
33200--33232
15
2.2
15
89
10
50
0
3
12
84
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33704--33739
3
11.7
3
94
5
63
63
0
0
36
0.94
45270--45306
14
2.5
15
87
12
51
27
8
0
64
1.21
45266--45314
19
2.7
18
84
6
62
24
6
0
69
1.11
46517--46554
20
1.9
20
88
0
58
23
10
47
18
1.79
47545--47572
14
2.0
14
100
0
56
14
28
0
57
1.38
52203--52270
27
2.5
28
85
7
95
30
11
22
35
1.90
56594--56661
27
2.5
28
88
7
104
30
13
22
33
1.92
58083--58117
5
7.0
5
100
0
70
80
0
0
20
0.72
61378--61655
109
2.7
106
82
10
335
41
8
8
41
1.66
61643--61688
3
15.3
3
95
0
83
65
0
0
34
0.93
63733--63784
22
2.4
22
100
0
104
42
25
5
26
1.77
68923--69062
33
4.2
32
78
7
111
10
26
42
21
1.84

Tables:   1

The End!