Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001359.1 Corchorus capsularis cultivar CVL-1 contig01359, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7777
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:1656 original size:18 final size:20

Alignment explanation


    Indices: 1630--1666  Score: 51
    Period size: 18  Copynumber: 1.9  Consensus size: 20

       1620 TTACCAAAAC

                                
       1630 ATTAAAGT-AT-TGAATTAA
          1 ATTAAAGTAATGTGAATTAA

                *              
       1648 ATTAGAGTAATGTGAATTA
          1 ATTAAAGTAATGTGAATTA

       1667 TATAGCTAAC


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  18    7  0.44
  19    2  0.12
  20    7  0.44

ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38


Consensus pattern (20 bp):   
ATTAAAGTAATGTGAATTAA

Found at i:1729 original size:11 final size:11

Alignment explanation


    Indices: 1712--1742  Score: 53
    Period size: 11  Copynumber: 2.8  Consensus size: 11

       1702 GACCAAAATG

                       
       1712 CCATCATTATC
          1 CCATCATTATC

            *          
       1723 TCATCATTATC
          1 CCATCATTATC

                     
       1734 CCATCATTA
          1 CCATCATTA

       1743 AGAGATTTTC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.29, C:0.32, G:0.00, T:0.39


Consensus pattern (11 bp):   
CCATCATTATC
Done.