genome.fa.s13591.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013591.1 Corchorus capsularis cultivar CVL-1 contig13612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120924

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2822--2856	10	3.7	9	88	11	52	14	0	0	85	0.59
3858--3965	33	3.3	32	87	5	108	11	27	40	20	1.86
6305--6349	20	2.2	20	84	0	54	35	22	15	26	1.94
6325--6380	29	1.9	29	100	0	112	33	19	17	28	1.95
6339--6437	49	2.0	50	90	0	139	33	17	20	29	1.95
13275--13378	38	2.7	38	80	7	129	32	18	18	30	1.95
13349--13438	30	2.9	30	84	12	128	31	17	16	34	1.93
13299--13438	62	2.2	64	87	8	196	31	17	18	32	1.95
16701--16746	20	2.3	20	84	0	56	34	21	15	28	1.94
16716--16805	26	3.6	26	68	8	87	33	18	18	28	1.95
24512--24548	19	2.0	18	94	5	65	48	0	21	29	1.50
24502--24549	11	4.8	10	80	17	55	43	0	20	35	1.52
28159--28279	36	3.4	36	79	6	149	32	24	5	37	1.79
28139--28299	69	2.3	69	91	0	250	29	22	5	42	1.76
28139--28299	36	4.7	33	72	8	133	29	22	5	42	1.76
28359--28734	35	10.6	35	90	4	578	24	19	9	46	1.79
28359--28734	71	5.3	70	90	4	578	24	19	9	46	1.79
28733--28850	40	3.0	40	81	3	141	23	14	11	50	1.76
28739--29083	36	9.2	37	75	11	260	25	17	10	46	1.79
28817--29098	111	2.6	110	84	3	334	25	17	9	47	1.78
28816--29071	74	3.5	75	83	6	249	25	17	9	46	1.79
34844--35426	48	12.2	48	82	4	638	11	23	24	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40382--40452	30	2.4	29	83	2	79	18	14	23	43	1.86
44142--44169	14	2.0	14	100	0	56	35	14	7	42	1.73
50548--50604	30	1.9	30	89	7	89	29	21	5	43	1.74
55031--55074	21	2.1	21	95	0	79	25	9	18	47	1.77
57693--57725	10	3.3	10	100	0	66	60	0	21	18	1.36
65074--65113	20	2.0	20	95	0	71	27	40	7	25	1.82
65237--65282	16	2.9	16	81	12	58	6	21	41	30	1.78
65220--65267	23	2.1	23	92	0	78	6	25	37	31	1.81
65516--65600	42	2.0	42	95	0	152	35	4	18	41	1.72
66125--66177	16	3.3	16	78	0	70	11	15	35	37	1.83
67774--68003	115	2.0	115	100	0	460	25	18	13	42	1.87
69216--69255	19	2.1	19	100	0	80	15	5	15	65	1.44
69249--69307	29	2.0	29	100	0	118	16	16	13	52	1.75
69249--69316	29	2.3	29	92	5	102	17	16	13	52	1.74
80781--80852	3	25.7	3	86	13	109	36	0	0	63	0.94
80954--81017	25	2.4	25	78	21	69	53	1	3	42	1.26
82714--82751	15	2.4	17	87	12	55	36	39	15	7	1.77
89006--89068	30	2.1	30	94	5	110	19	34	17	28	1.94
91398--91470	33	2.2	32	80	4	83	49	20	5	24	1.70
93256--93285	13	2.3	13	94	0	51	36	20	16	26	1.93
104352--104377	13	2.0	13	100	0	52	46	15	7	30	1.74
106885--106928	14	3.1	14	93	3	70	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108362--108434	36	2.0	36	100	0	146	35	5	47	10	1.62
108377--108435	18	3.3	18	67	9	57	33	3	52	10	1.52
109281--109320	20	2.0	20	90	0	62	22	2	57	17	1.52
109815--109864	3	16.7	3	100	0	100	66	0	0	34	0.92
110084--110126	15	2.9	14	83	10	50	9	76	0	13	1.01
110081--110127	20	2.3	20	79	13	60	8	76	0	14	1.01
112807--112895	29	3.1	29	86	0	124	49	8	3	38	1.51
113213--113288	28	2.6	28	81	10	82	44	3	2	48	1.35
113328--113407	31	2.6	31	80	11	92	43	15	12	28	1.82
114911--114939	15	1.9	15	100	0	58	27	0	10	62	1.28
114929--114979	18	2.8	18	84	3	66	23	0	3	72	1.01
117634--117689	21	2.6	21	97	2	103	14	19	46	19	1.84

Tables:   1

The End!