Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013592.1 Corchorus capsularis cultivar CVL-1 contig13613, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8497
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32


Found at i:4098 original size:22 final size:22

Alignment explanation


    Indices: 4070--4111  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       4060 AATGTTATGA

                     *    *       
       4070 AGAATGGAGGGAAGGAAGAGAC
          1 AGAATGGAGAGAAGAAAGAGAC

                                
       4092 AGAATGGAGAGAAGAAAGAG
          1 AGAATGGAGAGAAGAAAGAG

       4112 GAAGGAGCAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.50, C:0.02, G:0.43, T:0.05


Consensus pattern (22 bp):   
AGAATGGAGAGAAGAAAGAGAC
Done.