Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013594.1 Corchorus capsularis cultivar CVL-1 contig13615, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48835

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1447--1479
13
2.6
13
95
4
59
24
9
33
33
1.87
2784--2868
33
2.6
33
81
3
100
24
36
30
8
1.85
2784--2890
33
3.3
30
78
15
97
24
38
28
8
1.84
6197--6226
2
15.0
2
100
0
60
50
0
0
50
1.00
6240--6294
15
2.9
21
65
30
59
40
9
14
36
1.78
7457--7504
13
3.5
13
76
15
51
60
8
2
29
1.37
8508--8543
18
2.0
18
100
0
72
5
33
16
44
1.71
15211--15243
14
2.2
15
89
10
50
0
18
0
81
0.68
20469--20511
12
3.5
12
90
6
68
27
23
13
34
1.93
20864--20902
20
1.9
21
89
5
62
38
0
20
41
1.53
27868--27908
14
2.6
16
77
18
50
14
24
12
48
1.78
28112--28165
28
1.9
28
88
0
81
42
14
25
16
1.87
28906--28989
28
3.0
28
87
1
114
27
1
14
57
1.45
31449--31541
46
2.0
46
93
0
159
36
23
2
37
1.67
33021--33057
19
1.9
19
88
0
56
51
18
8
21
1.72
35766--35864
33
3.0
33
83
0
135
27
21
19
32
1.97
42398--42429
16
2.0
16
93
0
55
84
0
0
15
0.63
47791--47860
33
2.2
33
80
7
83
25
38
25
10
1.87

Tables:   1

The End!