Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000136.1 Corchorus capsularis cultivar CVL-1 contig00136, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1187
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29


Found at i:493 original size:21 final size:21

Alignment explanation


    Indices: 468--513  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        458 TGGCTGTGCG

                 *               
        468 CCCAGGCGCCTTGCCTGCGCA
          1 CCCAGCCGCCTTGCCTGCGCA

                    **       *   
        489 CCCAGCCGGTTTGCCTGGGCA
          1 CCCAGCCGCCTTGCCTGCGCA

                
        510 CCCA
          1 CCCA

        514 TGTGCCCTGG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.11, C:0.46, G:0.28, T:0.15


Consensus pattern (21 bp):   
CCCAGCCGCCTTGCCTGCGCA

Found at i:557 original size:13 final size:13

Alignment explanation


    Indices: 539--572  Score: 50
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        529 GCGCGGACAG

                         
        539 CACCCATGACAAC
          1 CACCCATGACAAC

                    *   *
        552 CACCCATGCCAAG
          1 CACCCATGACAAC

                    
        565 CACCCATG
          1 CACCCATG

        573 TCATGCCGAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  13   19  1.00

ACGTcount: A:0.32, C:0.47, G:0.12, T:0.09


Consensus pattern (13 bp):   
CACCCATGACAAC
Done.