genome.fa.s13603.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013603.1 Corchorus capsularis cultivar CVL-1 contig13624, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87927

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22--61	3	13.0	3	89	5	62	67	2	0	30	1.04
27--59	16	2.1	16	100	0	66	69	0	0	30	0.88
1950--2045	47	2.0	47	91	0	156	41	11	9	37	1.74
4213--4258	24	1.9	24	86	0	65	39	17	17	26	1.91
4711--4814	47	2.2	49	77	10	126	43	16	5	34	1.72
6300--6447	40	3.7	40	85	0	179	38	18	27	15	1.91
6561--6668	33	3.3	32	84	5	135	20	42	28	8	1.81
6581--6705	33	3.8	32	83	8	108	21	43	25	9	1.83
7608--7641	18	1.9	18	94	5	61	61	11	2	23	1.43
7607--7649	8	5.1	8	86	10	59	60	11	2	25	1.43
9158--9231	33	2.2	33	88	4	105	33	9	20	36	1.85
9255--9337	30	2.7	30	83	5	94	28	8	20	42	1.81
11095--11198	33	3.2	32	80	5	118	20	41	29	8	1.82
11111--11235	33	3.8	32	82	6	106	21	41	26	10	1.85
12618--13196	290	2.0	290	98	0	1113	27	22	20	30	1.98
13287--14098	41	19.1	41	81	10	802	37	20	26	15	1.92
13287--14098	88	9.5	84	85	8	815	37	20	26	15	1.92
13687--14141	46	10.6	46	79	11	366	37	20	26	15	1.93
14042--14141	47	2.2	46	81	5	112	37	18	30	15	1.91
15419--15461	21	2.0	21	100	0	86	23	23	20	32	1.98
22383--22455	33	2.2	33	97	0	137	27	32	21	17	1.96
30718--30751	11	3.2	10	84	15	50	29	2	17	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32785--33135	178	2.0	179	98	0	677	39	20	11	28	1.88
35793--35868	23	3.4	23	70	7	75	11	38	28	21	1.89
35789--35854	21	3.0	21	66	12	53	12	31	36	19	1.89
44949--44994	21	2.2	21	84	0	56	21	23	39	15	1.92
45108--45146	20	2.0	20	85	5	53	28	23	5	43	1.75
62247--62317	22	3.2	22	79	0	88	22	16	26	33	1.96
62400--63420	60	17.0	59	81	7	851	22	23	22	31	1.98
62740--63013	93	2.9	93	88	0	422	24	24	20	31	1.98
62795--63014	34	7.1	32	70	15	147	23	23	21	31	1.98
62625--63070	152	2.9	150	77	8	479	23	24	21	30	1.99
63214--63305	28	3.1	28	67	17	78	19	21	23	34	1.96
64067--64091	13	1.9	13	100	0	50	80	0	20	0	0.72
66644--66717	36	2.1	36	97	0	139	45	10	20	22	1.82
66729--67082	39	9.3	39	80	10	396	44	10	20	25	1.83
66729--67082	79	4.7	78	82	8	396	44	10	20	25	1.83
66729--67120	74	5.2	74	80	11	288	44	10	20	25	1.83
66738--67141	113	3.5	113	78	13	345	44	10	21	24	1.82
66967--67142	39	4.6	39	79	9	220	45	9	23	21	1.81
67171--67297	33	3.8	33	93	5	211	48	7	15	28	1.71
67171--67297	65	1.9	68	91	6	215	48	7	15	28	1.71
75247--75387	49	2.9	49	89	0	201	30	26	19	23	1.98
78573--78661	22	4.0	22	72	5	72	25	21	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78588--78672	44	1.9	44	90	0	134	23	20	27	29	1.99
78744--79413	59	11.3	59	88	1	750	21	24	22	32	1.98
79026--79126	32	3.3	32	68	18	106	22	25	21	29	1.99
80055--80080	11	2.4	11	100	0	52	38	15	15	30	1.88
81005--81049	13	3.5	13	90	3	74	22	13	8	55	1.65
81046--81072	6	4.5	6	100	0	54	29	0	14	55	1.40
81367--81427	32	1.9	32	93	0	104	45	9	4	39	1.59

Tables:   1

The End!