genome.fa.s13604.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013604.1 Corchorus capsularis cultivar CVL-1 contig13625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79238

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--59	13	3.5	13	90	3	74	22	13	8	55	1.65
56--82	6	4.5	6	100	0	54	29	0	14	55	1.40
288--516	60	3.8	60	90	1	354	21	21	22	33	1.97
388--480	28	3.0	31	64	17	77	18	19	25	36	1.94
4474--4545	32	2.3	32	92	2	119	34	9	6	48	1.63
4490--4557	32	2.1	32	83	0	82	32	10	4	52	1.55
4592--4670	42	1.9	41	84	2	104	29	10	3	56	1.49
8669--8731	33	1.9	33	90	0	99	9	26	42	20	1.83
8707--8782	33	2.3	32	80	6	89	9	26	42	22	1.83
8707--8845	66	2.1	67	80	9	160	10	27	40	22	1.86
8734--8846	33	3.4	33	83	2	147	9	27	38	23	1.86
10040--10105	33	2.0	33	93	0	114	19	19	34	25	1.96
10057--10121	33	2.0	33	82	11	80	23	21	30	24	1.99
16007--16051	13	3.5	13	90	3	74	22	13	8	55	1.65
16048--16074	6	4.5	6	100	0	54	29	0	14	55	1.40
18020--18054	12	3.1	12	84	16	56	28	40	25	5	1.78
22427--22509	36	2.4	34	88	7	116	49	9	16	24	1.76
22520--23193	39	17.6	39	88	8	957	44	10	20	25	1.82
22520--23193	153	4.4	154	87	8	950	44	10	20	25	1.82
22520--23193	192	3.5	190	88	8	1005	44	10	20	25	1.82
23015--23257	71	3.3	72	85	10	289	42	10	20	25	1.84
22520--23281	39	20.0	35	85	10	694	44	9	20	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22520--23281	114	6.7	109	83	12	633	44	9	20	24	1.82
23308--23434	33	3.8	33	90	5	193	48	7	15	28	1.71
23964--23993	15	2.0	15	93	0	51	6	56	26	10	1.57
28323--28427	33	3.2	33	82	5	131	24	10	21	42	1.84
28338--28463	33	3.8	32	82	7	101	26	11	22	39	1.87
28453--28561	33	3.3	33	94	0	191	28	11	16	44	1.82
28904--28961	30	1.9	30	86	6	82	29	17	29	24	1.97
30586--30633	21	2.3	21	85	7	62	25	14	6	54	1.63
30602--30641	21	1.9	21	84	0	53	22	17	7	52	1.69
30675--30747	37	2.0	35	84	5	92	19	19	4	57	1.56
30722--30843	47	2.6	47	85	12	144	16	23	1	58	1.47
30785--30843	7	8.7	7	71	14	52	15	23	1	59	1.45
30776--30850	14	6.0	14	69	30	53	17	22	4	56	1.58
30776--30812	19	1.9	19	88	0	56	16	24	2	56	1.53
30832--31183	22	16.7	22	73	13	246	19	19	6	54	1.65
30878--30950	37	2.0	37	86	2	103	17	17	9	54	1.69
30904--30936	15	2.2	15	94	0	57	21	15	9	54	1.68
30944--31152	21	9.7	23	74	17	93	20	20	5	53	1.66
30916--31166	65	3.9	66	80	9	270	20	20	5	53	1.65
30942--31183	42	5.7	44	81	12	249	21	20	5	52	1.66
31520--31567	23	2.3	21	82	13	55	35	25	2	37	1.68
31648--31808	55	2.9	55	90	0	241	25	19	6	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34703--34738	18	2.1	17	94	5	63	63	8	16	11	1.49
36047--36121	33	2.3	33	88	4	107	20	44	28	8	1.79
44283--44318	10	3.6	10	96	0	63	22	11	16	50	1.77
44707--44745	19	2.1	19	90	4	62	41	20	0	38	1.53
48542--48640	33	3.0	32	83	5	110	20	44	26	9	1.81
48600--48643	23	1.9	23	85	0	61	22	43	25	9	1.82
57395--57447	27	2.0	27	100	0	106	20	22	22	33	1.97
58002--58050	21	2.3	21	82	6	55	40	16	28	14	1.87
69352--69393	21	2.0	21	95	0	75	14	30	38	16	1.89
70920--70955	12	3.0	12	87	0	54	5	30	36	27	1.80
71647--71695	21	2.3	21	78	0	53	18	6	8	67	1.37
72136--72175	13	3.2	13	96	3	73	50	15	17	17	1.79
77809--77857	21	2.3	23	80	19	54	16	12	24	46	1.81

Tables:   1

The End!