genome.fa.s13616.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013616.1 Corchorus capsularis cultivar CVL-1 contig13637, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73960

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6511--6551	21	2.0	21	100	0	82	19	14	34	31	1.92
6699--6737	17	2.3	17	90	0	60	25	5	43	25	1.75
7069--7432	156	2.3	154	79	10	384	34	19	15	30	1.93
11341--11366	2	13.0	2	100	0	52	50	0	0	50	1.00
17740--17772	2	16.5	2	100	0	66	51	0	0	48	1.00
17801--17825	12	2.1	12	100	0	50	16	8	36	40	1.77
18497--18536	6	6.7	6	91	0	62	35	12	2	50	1.54
18751--18836	32	2.8	30	89	8	120	47	8	6	37	1.60
21520--21569	23	2.2	23	81	0	55	44	12	12	32	1.78
28969--29120	61	2.5	62	90	3	227	23	16	14	46	1.83
30448--30493	22	2.1	21	84	4	56	30	13	6	50	1.66
30521--30606	45	1.9	45	80	4	102	37	16	12	33	1.87
30645--30927	22	13.1	22	71	14	135	36	14	8	40	1.77
30680--30838	82	1.9	83	81	6	189	34	13	8	43	1.74
30918--30961	19	2.3	19	92	0	70	25	20	6	47	1.74
31183--31373	44	4.4	44	77	5	174	35	13	8	42	1.75
31210--31352	66	2.2	65	82	6	171	35	14	9	40	1.78
31180--31512	22	15.0	22	72	10	140	34	15	9	40	1.79
31336--31434	21	4.5	22	79	12	96	34	13	9	43	1.75
31530--31590	24	2.7	23	78	9	63	36	16	9	37	1.82
31626--31765	22	6.3	22	74	9	113	39	18	9	32	1.83
32516--32581	31	2.1	31	88	5	98	45	6	21	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32679--32833	62	2.5	61	87	4	211	32	13	10	43	1.79
32891--33127	22	10.7	22	70	14	105	38	15	11	34	1.84
33124--33156	14	2.4	14	90	5	50	42	21	0	36	1.53
33146--33354	22	9.8	21	71	14	151	35	15	8	40	1.77
33191--33354	66	2.5	66	80	7	172	34	14	9	41	1.78
33460--33580	22	5.5	22	79	3	127	32	14	10	42	1.81
33436--33580	44	3.3	44	74	9	143	32	13	11	42	1.80
33856--33914	30	1.9	31	89	3	93	49	3	15	32	1.61
33952--33981	16	1.9	15	93	6	51	53	0	13	33	1.40
35526--35564	2	19.5	2	100	0	78	51	0	0	48	1.00
41450--41491	21	2.0	22	90	4	68	4	9	50	35	1.56
42098--42280	27	6.4	30	74	15	133	18	24	3	54	1.58
42262--42308	21	2.2	21	88	0	67	23	21	4	51	1.65
42291--42640	14	25.1	14	66	14	82	21	22	4	52	1.63
42260--42374	26	4.2	26	79	12	124	20	19	3	57	1.55
42270--42462	36	5.6	35	72	13	116	20	20	3	54	1.59
42415--42566	28	5.5	28	81	11	152	21	21	4	52	1.64
42562--42615	27	2.0	27	88	0	81	24	25	5	44	1.75
42394--42607	7	30.7	7	70	13	84	21	22	4	51	1.64
49318--49605	150	1.9	150	99	0	567	36	12	13	37	1.83
53491--53526	18	2.0	18	88	0	54	27	27	16	27	1.97
55053--55077	12	2.1	12	100	0	50	28	8	8	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60207--60334	52	2.4	54	81	13	167	60	7	3	29	1.39
63771--63836	16	4.1	16	100	0	132	39	36	18	6	1.75
63890--63927	15	2.4	17	87	12	55	36	39	15	7	1.77
64999--65134	42	3.3	40	78	15	129	26	21	13	38	1.90
66904--66966	16	3.9	15	76	12	63	77	0	22	0	0.76
68286--68814	70	7.7	70	86	5	647	25	26	18	28	1.98
68286--68814	139	3.8	139	87	4	691	25	26	18	28	1.98
69038--69080	19	2.2	20	87	4	61	72	0	18	9	1.11
71567--71620	22	2.5	22	90	0	90	35	9	40	14	1.78
73270--73361	27	3.4	27	86	1	121	45	22	13	18	1.84

Tables:   1

The End!