Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013617.1 Corchorus capsularis cultivar CVL-1 contig13638, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18798
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Found at i:1288 original size:36 final size:36
Alignment explanation
Indices: 1243--1350 Score: 119
Period size: 36 Copynumber: 3.0 Consensus size: 36
1233 AGTTCAGTTA
* * *
1243 AAAAGAGTAAAATAGTAAAAAGTGATTG-GTAATCAGT
1 AAAA-AGTAAAATAGTAAAAAATGA-AGAGTAATCAGG
*
1280 AAACAGTAAAATAGTAAAAAATGAAGAGTAATCAGG
1 AAAAAGTAAAATAGTAAAAAATGAAGAGTAATCAGG
* * * *
1316 AAAAAGTAAAATGGTAAAGAGTAAAGAGTAATCAG
1 AAAAAGTAAAATAGTAAAAAATGAAGAGTAATCAG
1351 TAAAGAGCAA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
35 1 0.02
36 57 0.93
37 3 0.05
ACGTcount: A:0.56, C:0.04, G:0.21, T:0.19
Consensus pattern (36 bp):
AAAAAGTAAAATAGTAAAAAATGAAGAGTAATCAGG
Found at i:1339 original size:7 final size:7
Alignment explanation
Indices: 1329--1613 Score: 123
Period size: 7 Copynumber: 40.6 Consensus size: 7
1319 AAGTAAAATG
1329 GTAAAGA
1 GTAAAGA
1336 GTAAAGA
1 GTAAAGA
**
1343 GTAATCA
1 GTAAAGA
1350 GTAAAGA
1 GTAAAGA
*
1357 GCAAAGA
1 GTAAAGA
**
1364 GTAATCA
1 GTAAAGA
***
1371 GTATTCA
1 GTAAAGA
1378 GTAAAGA
1 GTAAAGA
*
1385 GCAAAGA
1 GTAAAGA
**
1392 GTAATCA
1 GTAAAGA
**
1399 GTAATCA
1 GTAAAGA
1406 GTAAAGA
1 GTAAAGA
**
1413 GTATTG-
1 GTAAAGA
**
1419 GTAATCA
1 GTAAAGA
1426 GTAAATG-
1 GTAAA-GA
1433 GTAAAGA
1 GTAAAGA
1440 GTAAAGA
1 GTAAAGA
**
1447 GTAATCA
1 GTAAAGA
1454 GTAAAGA
1 GTAAAGA
*
1461 GCAAAGA
1 GTAAAGA
1468 GTAAAGA
1 GTAAAGA
**
1475 GTAATCA
1 GTAAAGA
1482 GTAAAGA
1 GTAAAGA
*
1489 GCAAAGA
1 GTAAAGA
**
1496 GTAATCA
1 GTAAAGA
**
1503 GTAATCA
1 GTAAAGA
1510 GTAAAGA
1 GTAAAGA
*
1517 GTAATG-
1 GTAAAGA
**
1523 GTAATCA
1 GTAAAGA
1530 GTAAATG-
1 GTAAA-GA
1537 GTGAAAGA
1 GT-AAAGA
**
1545 GTAATCA
1 GTAAAGA
*
1552 ATAAA-A
1 GTAAAGA
*
1558 GTAAACA
1 GTAAAGA
1565 TGTTAAAGA
1 -G-TAAAGA
**
1574 GTAATCA
1 GTAAAGA
*
1581 GTAAAAA
1 GTAAAGA
1588 GTAAA-A
1 GTAAAGA
*
1594 TGGTAAAAA
1 --GTAAAGA
1603 GTAAAGA
1 GTAAAGA
1610 GTAA
1 GTAA
1614 TCCGTAAGGA
Statistics
Matches: 210, Mismatches: 55, Indels: 26
0.72 0.19 0.09
Matches are distributed among these distances:
6 16 0.08
7 176 0.84
8 12 0.06
9 6 0.03
ACGTcount: A:0.51, C:0.06, G:0.22, T:0.21
Consensus pattern (7 bp):
GTAAAGA
Found at i:1354 original size:21 final size:21
Alignment explanation
Indices: 1329--1521 Score: 138
Period size: 21 Copynumber: 8.9 Consensus size: 21
1319 AAGTAAAATG
1329 GTAAAGAGTAAAGAGTAATCA
1 GTAAAGAGTAAAGAGTAATCA
*
1350 GTAAAGAGCAAAGAGTAATCAGTATTCA
1 GTAAAGAGTAAAGAG---T-A--A-TCA
*
1378 GTAAAGAGCAAAGAGTAATCA
1 GTAAAGAGTAAAGAGTAATCA
** **
1399 GTAATCAGTAAAGAGT-ATTG
1 GTAAAGAGTAAAGAGTAATCA
** **
1419 GTAATCAGTAAATG-GTAAAGA
1 GTAAAGAGTAAA-GAGTAATCA
** **
1440 GTAAAGAGTAATCAGTAAAGA
1 GTAAAGAGTAAAGAGTAATCA
*
1461 GCAAAGAGTAAAGAGTAATCA
1 GTAAAGAGTAAAGAGTAATCA
*
1482 GTAAAGAGCAAAGAGTAATCA
1 GTAAAGAGTAAAGAGTAATCA
**
1503 GTAATCAGTAAAGAGTAAT
1 GTAAAGAGTAAAGAGTAAT
1522 GGTAATCAGT
Statistics
Matches: 139, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
20 16 0.12
21 99 0.71
22 1 0.01
24 2 0.01
25 2 0.01
27 1 0.01
28 18 0.13
ACGTcount: A:0.49, C:0.07, G:0.23, T:0.20
Consensus pattern (21 bp):
GTAAAGAGTAAAGAGTAATCA
Found at i:1373 original size:28 final size:28
Alignment explanation
Indices: 1331--1533 Score: 226
Period size: 28 Copynumber: 7.6 Consensus size: 28
1321 GTAAAATGGT
**
1331 AAAGAGTAAAGAGTAATCAGTAAAGAGC
1 AAAGAGTAATCAGTAATCAGTAAAGAGC
*
1359 AAAGAGTAATCAGTATTCAGTAAAGAGC
1 AAAGAGTAATCAGTAATCAGTAAAGAGC
*
1387 AAAGAGTAATCAGTAATCAGTAAAGAGT
1 AAAGAGTAATCAGTAATCAGTAAAGAGC
** *
1415 ATTG-GTAATCAGTAA--A-T---G-GT
1 AAAGAGTAATCAGTAATCAGTAAAGAGC
**
1435 AAAGAGTAAAGAGTAATCAGTAAAGAGC
1 AAAGAGTAATCAGTAATCAGTAAAGAGC
**
1463 AAAGAGTAAAGAGTAATCAGTAAAGAGC
1 AAAGAGTAATCAGTAATCAGTAAAGAGC
*
1491 AAAGAGTAATCAGTAATCAGTAAAGAGT
1 AAAGAGTAATCAGTAATCAGTAAAGAGC
*
1519 AATG-GTAATCAGTAA
1 AAAGAGTAATCAGTAA
1534 ATGGTGAAAG
Statistics
Matches: 151, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.03
21 10 0.07
23 1 0.01
24 2 0.01
25 1 0.01
27 23 0.15
28 110 0.73
ACGTcount: A:0.49, C:0.07, G:0.23, T:0.20
Consensus pattern (28 bp):
AAAGAGTAATCAGTAATCAGTAAAGAGC
Found at i:1439 original size:104 final size:104
Alignment explanation
Indices: 1324--1548 Score: 405
Period size: 104 Copynumber: 2.2 Consensus size: 104
1314 GGAAAAAGTA
* *
1324 AAATGGTAAAGAGTAAAGAGTAATCAGTAAAGAGCAAAGAGTAATCAGTATTCAGTAAAGAGCAA
1 AAATGGTAAAGAGTAAAGAGTAATCAGTAAAGAGCAAAGAGTAAACAGTAATCAGTAAAGAGCAA
*
1389 AGAGTAATCAGTAATCAGTAAAGAGTATTGGTAATCAGT
66 AGAGTAATCAGTAATCAGTAAAGAGTAATGGTAATCAGT
*
1428 AAATGGTAAAGAGTAAAGAGTAATCAGTAAAGAGCAAAGAGTAAAGAGTAATCAGTAAAGAGCAA
1 AAATGGTAAAGAGTAAAGAGTAATCAGTAAAGAGCAAAGAGTAAACAGTAATCAGTAAAGAGCAA
1493 AGAGTAATCAGTAATCAGTAAAGAGTAATGGTAATCAGT
66 AGAGTAATCAGTAATCAGTAAAGAGTAATGGTAATCAGT
1532 AAATGGTGAAAGAGTAA
1 AAATGGT-AAAGAGTAA
1549 TCAATAAAAG
Statistics
Matches: 116, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
104 107 0.92
105 9 0.08
ACGTcount: A:0.49, C:0.07, G:0.24, T:0.20
Consensus pattern (104 bp):
AAATGGTAAAGAGTAAAGAGTAATCAGTAAAGAGCAAAGAGTAAACAGTAATCAGTAAAGAGCAA
AGAGTAATCAGTAATCAGTAAAGAGTAATGGTAATCAGT
Found at i:1571 original size:15 final size:15
Alignment explanation
Indices: 1554--1607 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
1544 AGTAATCAAT
1554 AAAAGTAAACATGTTA
1 AAAAGTAAACATG-TA
* *
1570 AAGAGTAATCA-GTA
1 AAAAGTAAACATGTA
1584 AAAAGTAAA-ATGGTA
1 AAAAGTAAACAT-GTA
1599 AAAAGTAAA
1 AAAAGTAAA
1608 GAGTAATCCG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 1 0.03
14 9 0.28
15 13 0.41
16 9 0.28
ACGTcount: A:0.59, C:0.04, G:0.17, T:0.20
Consensus pattern (15 bp):
AAAAGTAAACATGTA
Found at i:1577 original size:29 final size:29
Alignment explanation
Indices: 1532--1606 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
1522 GGTAATCAGT
1532 AAATGGTGAAAGAGTAATCAAT-AAAAGTA
1 AAATGGT-AAAGAGTAATCAATAAAAAGTA
* *
1561 AACATGTTAAAGAGTAATCAGTAAAAAGTA
1 AA-ATGGTAAAGAGTAATCAATAAAAAGTA
*
1591 AAATGGTAAAAAGTAA
1 AAATGGTAAAGAGTAA
1607 AGAGTAATCC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
29 27 0.68
30 13 0.32
ACGTcount: A:0.56, C:0.04, G:0.19, T:0.21
Consensus pattern (29 bp):
AAATGGTAAAGAGTAATCAATAAAAAGTA
Found at i:1593 original size:36 final size:35
Alignment explanation
Indices: 1568--1724 Score: 135
Period size: 36 Copynumber: 4.5 Consensus size: 35
1558 GTAAACATGT
1568 TAAAGAGTAATCAGTAAAAAGTAAAATGGTAAAAAG
1 TAAAGAGTAATCAGTAAAAAGTAAAA-GGTAAAAAG
* ** *
1604 TAAAGAGTAATCCGTAAGGAGTAAAATGATAAAAAG
1 TAAAGAGTAATCAGTAAAAAGTAAAA-GGTAAAAAG
* * ** *
1640 -AAA-AATGAA-GAGTAATCAGTAAAAAGT-AAAA-
1 TAAAGAGT-AATCAGTAAAAAGTAAAAGGTAAAAAG
* *
1671 TGAAGAGTAATCAGTAAAAAGTAAAATGGTAAAGAG
1 TAAAGAGTAATCAGTAAAAAGTAAAA-GGTAAAAAG
*
1707 TAAATAGTAATCAGTAAA
1 TAAAGAGTAATCAGTAAA
1725 GTGAAAATGG
Statistics
Matches: 94, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
32 8 0.09
33 15 0.16
34 15 0.16
35 8 0.09
36 48 0.51
ACGTcount: A:0.57, C:0.04, G:0.20, T:0.20
Consensus pattern (35 bp):
TAAAGAGTAATCAGTAAAAAGTAAAAGGTAAAAAG
Found at i:1612 original size:29 final size:30
Alignment explanation
Indices: 1554--1613 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
1544 AGTAATCAAT
* * *
1554 AAAAGTAAACATGTTAAAGAGTAATCAGTA
1 AAAAGTAAACATGGTAAAAAGTAAACAGTA
*
1584 AAAAGTAAA-ATGGTAAAAAGTAAAGAGTA
1 AAAAGTAAACATGGTAAAAAGTAAACAGTA
1613 A
1 A
1614 TCCGTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.58, C:0.03, G:0.18, T:0.20
Consensus pattern (30 bp):
AAAAGTAAACATGGTAAAAAGTAAACAGTA
Found at i:1613 original size:14 final size:14
Alignment explanation
Indices: 1433--1716 Score: 63
Period size: 14 Copynumber: 20.8 Consensus size: 14
1423 TCAGTAAATG
*
1433 GTAAAGAGTAAAGA
1 GTAAAAAGTAAAGA
**
1447 GTAATCAGTAAAGA
1 GTAAAAAGTAAAGA
* *
1461 GCAAAGAGTAAAGA
1 GTAAAAAGTAAAGA
**
1475 GTAATCAGTAAAGA
1 GTAAAAAGTAAAGA
* * **
1489 GCAAAGAGTAATCA
1 GTAAAAAGTAAAGA
**
1503 GTAATCAGTAAAGA
1 GTAAAAAGTAAAGA
** **
1517 GT-AATGGTAATCA
1 GTAAAAAGTAAAGA
**
1530 GTAAATGGTGAAAGA
1 GTAAAAAGT-AAAGA
*
1545 GTAATCAA-TAAA-A
1 GTAA-AAAGTAAAGA
*
1558 GTAAACATGTTAAAGA
1 GTAAA-AAG-TAAAGA
** *
1574 GTAATCAGTAAAAA
1 GTAAAAAGTAAAGA
1588 GT-AAAA-T---G-
1 GTAAAAAGTAAAGA
1596 GTAAAAAGTAAAGA
1 GTAAAAAGTAAAGA
*** *
1610 GTAATCCGTAAGGA
1 GTAAAAAGTAAAGA
* *
1624 GTAAAATGATAAAAA
1 GTAAAAAG-TAAAGA
*
1639 G-AAAAA-TGAAGA
1 GTAAAAAGTAAAGA
** *
1651 GTAATCAGTAAAAA
1 GTAAAAAGTAAAGA
*
1665 GT-AAAA-TGAAGA
1 GTAAAAAGTAAAGA
** *
1677 GTAATCAGTAAAAA
1 GTAAAAAGTAAAGA
*
1691 GTAAAATGGTAAAGA
1 GTAAAA-AGTAAAGA
*
1706 GTAAATAGTAA
1 GTAAAAAGTAA
1717 TCAGTAAAGT
Statistics
Matches: 184, Mismatches: 67, Indels: 38
0.64 0.23 0.13
Matches are distributed among these distances:
8 2 0.01
9 4 0.02
10 1 0.01
12 12 0.07
13 24 0.13
14 107 0.58
15 29 0.16
16 5 0.03
ACGTcount: A:0.54, C:0.05, G:0.21, T:0.20
Consensus pattern (14 bp):
GTAAAAAGTAAAGA
Found at i:1664 original size:26 final size:26
Alignment explanation
Indices: 1633--1747 Score: 124
Period size: 26 Copynumber: 4.2 Consensus size: 26
1623 AGTAAAATGA
*
1633 TAAAAAGAAAAATGAAGAGTAATCAG
1 TAAAAAGTAAAATGAAGAGTAATCAG
1659 TAAAAAGTAAAATGAAGAGTAATCAG
1 TAAAAAGTAAAATGAAGAGTAATCAG
1685 TAAAAAGTAAAATGGTAAAGAGTAAAT-AG
1 TAAAAAGTAAAAT-G--AAGAGT-AATCAG
** * *
1714 TAATCAGTAAAGTGAAAATGGTAATCAG
1 TAAAAAGTAAAATGAAGA--GTAATCAG
1742 TAAAAA
1 TAAAAA
1748 AGAGAGTAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
26 41 0.55
27 4 0.05
28 9 0.12
29 18 0.24
30 3 0.04
ACGTcount: A:0.57, C:0.03, G:0.19, T:0.20
Consensus pattern (26 bp):
TAAAAAGTAAAATGAAGAGTAATCAG
Found at i:1725 original size:21 final size:21
Alignment explanation
Indices: 1699--1745 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
1689 AAGTAAAATG
*
1699 GTAAAGAGTAAATAGTAATCA
1 GTAAAGAGAAAATAGTAATCA
* *
1720 GTAAAGTGAAAATGGTAATCA
1 GTAAAGAGAAAATAGTAATCA
1741 GTAAA
1 GTAAA
1746 AAAGAGAGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.51, C:0.04, G:0.21, T:0.23
Consensus pattern (21 bp):
GTAAAGAGAAAATAGTAATCA
Found at i:1873 original size:27 final size:27
Alignment explanation
Indices: 1727--1887 Score: 125
Period size: 27 Copynumber: 5.7 Consensus size: 27
1717 TCAGTAAAGT
1727 GAAAATGGTAATCAGTAAAAAAGAGAGTAA
1 GAAAATGGTAATCAGT--AAAA-AGAGTAA
*
1757 -AGAATGGTAATCAGTAGAAAAAAAAAGAGTAA
1 GAAAATGGTAATCAGT------AAAAAGAGTAA
* *
1789 GAAAATGGTAATCAGCAGATAAGAGTAA
1 GAAAATGGTAATCAGTA-AAAAGAGTAA
* * *
1817 -AAAATGGTATTCGGTAAAAA-AGGTAG
1 GAAAATGGTAATCAGTAAAAAGA-GTAA
1843 GAAAATGGTAATCAGTAAAAAGAGTAA
1 GAAAATGGTAATCAGTAAAAAGAGTAA
*
1870 G-AAA-GGTAATTAGTAAAA
1 GAAAATGGTAATCAGTAAAA
1888 GAAGAAGGTA
Statistics
Matches: 109, Mismatches: 13, Indels: 23
0.75 0.09 0.16
Matches are distributed among these distances:
25 14 0.13
26 9 0.08
27 36 0.33
28 10 0.09
29 14 0.13
32 7 0.06
33 19 0.17
ACGTcount: A:0.54, C:0.04, G:0.24, T:0.19
Consensus pattern (27 bp):
GAAAATGGTAATCAGTAAAAAGAGTAA
Found at i:8495 original size:422 final size:422
Alignment explanation
Indices: 7702--8535 Score: 1578
Period size: 422 Copynumber: 2.0 Consensus size: 422
7692 CTTAGGAGTT
*
7702 CAATTGCAGGTCTAATTGAGAGCTTTAGGCCGACGAACGAAGAGGAAGACTAGGTTAGGTTTATC
1 CAATTGCAGGTCTAATTGAGAGCTTTAGGCCGACGAACAAAGAGGAAGACTAGGTTAGGTTTATC
7767 TACTCATACAAGTCTAGAAGTATTGGTGTTTCAAGTTTATCTTTGGCAGGTCTCAAAGGTGGATT
66 TACTCATACAAGTCTAGAAGTATTGGTGTTTCAAGTTTATCTTTGGCAGGTCTCAAAGGTGGATT
*
7832 TGAATCTAACACAACTAGATTCGTATCAGGTTGAATCTAAAGTATAACTCATGGAATTTGCTGTT
131 TGAATCTAACACAACTAGATTCGTATCAGGTTGAATCTAAAGTATAACGCATGGAATTTGCTGTT
* *
7897 CATGCGCCACCTCCATGGCCCAAGTTATGAGCAAAGAGTAAACAATGCAAGTGATTGGTTTGCCT
196 CACGCGCCACCTCCATGGCCCAAGTTATGAGCAAAAAGTAAACAATGCAAGTGATTGGTTTGCCT
7962 TGGTCGTTACTACTTGCTATAAGGTTATTCAGATTTTTTTTGCCTCGACATTTGAACTCAGCCCC
261 TGGTCGTTACTACTTGCTATAAGGTTATTCAGATTTTTTTTGCCTCGACATTTGAACTCAGCCCC
*
8027 GTACTTCTCTCTGTCGTCGTTGGGTTTTAATCCGTCGTCGTAGCCATCCAAAAAGGTGACGAATG
326 GTACTTCTCTCTGTCGTCGTTGGGTTTTAATCCGTCGTCATAGCCATCCAAAAAGGTGACGAATG
*
8092 ATAGGCCTTCAGCTTTAGGGACAAAAAGGTGA
391 ATAGGCCTTCAACTTTAGGGACAAAAAGGTGA
*
8124 CAATTGTAGGTCTAATTGAGAGCTTTAGGCCGACGAACAAAGAGGAAGACTAGGTTAGGTTTATC
1 CAATTGCAGGTCTAATTGAGAGCTTTAGGCCGACGAACAAAGAGGAAGACTAGGTTAGGTTTATC
*
8189 TACTCATACAAGTCTAGAAGTATTGGTGTTTCAAGTTTATCTTTGGCGGGTCTCAAAGGTGGATT
66 TACTCATACAAGTCTAGAAGTATTGGTGTTTCAAGTTTATCTTTGGCAGGTCTCAAAGGTGGATT
8254 TGAATCTAACACAACTAGATTCGTATCAGGTTGAATCTAAAGTATAACGCATGGAATTTGCTGTT
131 TGAATCTAACACAACTAGATTCGTATCAGGTTGAATCTAAAGTATAACGCATGGAATTTGCTGTT
8319 CACGCGCCACCTCCATGGCCCAAGTTATGAGCAAAAAGTAAACAATGCAAGTGATTGGTTTGCCT
196 CACGCGCCACCTCCATGGCCCAAGTTATGAGCAAAAAGTAAACAATGCAAGTGATTGGTTTGCCT
*
8384 TGGTCGTTACTACTTGCTATAAGGTTATTCAGATTTTTTTTGCCTCGACGTTTGAACTCAGCCCC
261 TGGTCGTTACTACTTGCTATAAGGTTATTCAGATTTTTTTTGCCTCGACATTTGAACTCAGCCCC
*
8449 GTACTTCTCTCTGTCGTCGTTGGGTTTTAATCTGTCGTCATAGCCATCCAAAAAGGTGACGAATG
326 GTACTTCTCTCTGTCGTCGTTGGGTTTTAATCCGTCGTCATAGCCATCCAAAAAGGTGACGAATG
8514 ATAGGCCTTCAACTTTAGGGAC
391 ATAGGCCTTCAACTTTAGGGAC
8536 TTCAGTCATG
Statistics
Matches: 402, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
422 402 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (422 bp):
CAATTGCAGGTCTAATTGAGAGCTTTAGGCCGACGAACAAAGAGGAAGACTAGGTTAGGTTTATC
TACTCATACAAGTCTAGAAGTATTGGTGTTTCAAGTTTATCTTTGGCAGGTCTCAAAGGTGGATT
TGAATCTAACACAACTAGATTCGTATCAGGTTGAATCTAAAGTATAACGCATGGAATTTGCTGTT
CACGCGCCACCTCCATGGCCCAAGTTATGAGCAAAAAGTAAACAATGCAAGTGATTGGTTTGCCT
TGGTCGTTACTACTTGCTATAAGGTTATTCAGATTTTTTTTGCCTCGACATTTGAACTCAGCCCC
GTACTTCTCTCTGTCGTCGTTGGGTTTTAATCCGTCGTCATAGCCATCCAAAAAGGTGACGAATG
ATAGGCCTTCAACTTTAGGGACAAAAAGGTGA
Found at i:14323 original size:14 final size:14
Alignment explanation
Indices: 14304--14333 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14294 TTATCCTGTA
14304 AATCTCATCTAGTG
1 AATCTCATCTAGTG
14318 AATCTCATCTAGTG
1 AATCTCATCTAGTG
14332 AA
1 AA
14334 ATTAGGGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (14 bp):
AATCTCATCTAGTG
Done.