genome.fa.s13619.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013619.1 Corchorus capsularis cultivar CVL-1 contig13640, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45746

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183--1225	20	2.2	20	95	0	77	32	39	2	25	1.69
1828--1864	6	6.0	6	96	3	65	81	0	18	0	0.70
2232--2301	29	2.4	29	85	2	86	38	28	12	20	1.89
5539--5641	54	1.9	53	84	5	136	23	33	15	28	1.95
7668--7709	19	2.2	20	86	4	59	52	2	26	19	1.58
8576--8615	20	2.0	20	90	0	62	15	0	55	30	1.41
9122--9159	18	2.1	18	90	0	58	7	7	5	78	1.07
13332--13398	31	2.2	31	89	5	102	46	17	14	20	1.84
14973--15029	29	1.9	30	86	10	82	29	12	15	42	1.84
23432--23505	21	3.5	20	89	7	103	25	6	27	40	1.80
23875--23987	30	3.8	31	76	13	112	38	0	3	56	1.23
23891--23951	32	2.0	30	87	6	86	34	1	3	60	1.23
23935--23992	13	4.5	13	83	12	59	44	0	1	53	1.10
24111--24165	10	5.4	10	79	12	67	45	1	1	50	1.22
24042--24314	92	3.1	92	66	18	268	38	3	8	49	1.50
23946--24430	174	2.8	174	96	0	891	37	2	8	51	1.47
24275--24330	13	4.8	13	69	24	52	46	1	1	50	1.22
24282--24320	20	2.0	20	94	0	69	48	2	2	46	1.29
24321--24373	25	2.2	24	83	10	63	32	3	1	62	1.24
23981--24416	82	5.1	81	65	26	245	36	3	8	51	1.49
24556--24684	24	5.4	24	79	0	141	33	7	44	14	1.74
27093--27126	17	2.0	17	88	0	50	79	2	2	14	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28666--28895	7	32.9	7	65	17	59	20	23	1	54	1.52
28666--28885	34	6.5	33	77	12	191	20	23	1	54	1.52
28799--28883	13	6.2	14	74	5	50	22	22	2	52	1.58
28876--29294	22	19.1	21	67	18	153	18	21	6	53	1.67
29050--29294	22	11.4	22	72	11	179	20	20	5	53	1.65
29046--29262	43	5.0	43	78	6	167	19	20	5	53	1.64
29571--29712	26	5.2	25	65	21	72	24	17	7	50	1.71
29479--29726	55	4.5	55	95	1	435	25	17	6	49	1.71
29762--29822	22	2.8	22	90	5	88	19	22	8	49	1.75
29748--29829	22	3.8	21	80	15	80	19	20	7	52	1.70
33174--33247	28	2.6	28	89	0	103	43	27	12	17	1.84
41503--41641	74	1.9	75	87	1	208	51	15	5	28	1.64

Tables:   1

The End!