Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013622.1 Corchorus capsularis cultivar CVL-1 contig13643, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50119

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5231--5264
8
4.1
8
85
7
50
23
2
14
58
1.50
6236--6342
33
3.2
32
84
5
117
9
28
39
22
1.85
6655--6785
27
4.9
26
75
10
106
21
20
3
54
1.60
6681--6819
55
2.5
57
81
11
162
20
20
2
56
1.55
6702--6814
29
4.0
29
77
16
94
19
22
2
55
1.55
6686--6814
27
4.6
30
71
21
93
20
21
2
55
1.55
6824--6894
27
2.7
26
82
8
72
19
26
2
50
1.61
6851--6932
37
2.2
37
82
8
105
17
20
2
59
1.48
6880--6952
27
2.7
27
85
6
112
17
21
2
57
1.52
6852--6986
64
2.1
63
81
11
159
17
23
2
56
1.54
7137--7554
20
20.5
21
68
20
117
22
21
4
51
1.66
7213--7286
29
2.7
28
79
6
80
17
21
4
56
1.57
7213--7269
14
4.0
14
79
4
69
15
22
3
57
1.53
7123--7570
120
3.7
120
88
4
641
21
21
4
51
1.66
7474--7529
7
8.0
7
76
7
51
17
17
3
60
1.50
7412--7570
22
7.5
22
70
14
77
20
22
5
50
1.69
7584--7650
30
2.2
31
89
7
102
26
17
7
47
1.74
8228--8275
25
1.9
25
86
0
69
56
18
12
12
1.67
10625--10679
16
3.4
16
68
22
51
49
10
20
20
1.78
10623--10692
33
2.1
34
94
2
124
55
11
17
15
1.68
13860--13889
5
6.2
5
96
3
53
0
16
0
83
0.65
15266--15292
14
1.9
14
100
0
54
66
3
22
7
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16751--16817
31
2.2
31
91
0
107
35
20
11
31
1.89
17105--17165
31
2.0
31
90
0
95
37
19
8
34
1.82
16709--17363
352
1.9
351
90
2
1046
32
16
14
36
1.89
22566--22594
10
3.0
10
95
5
51
20
27
10
41
1.85
29985--30032
24
2.0
24
88
8
71
41
0
4
54
1.20
30016--30070
27
2.0
28
82
3
67
38
0
1
60
1.08
34283--34319
2
20.0
2
84
15
53
48
0
0
51
1.00
34392--34436
18
2.4
18
81
7
54
55
8
0
35
1.31

Tables:   1

The End!