Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013624.1 Corchorus capsularis cultivar CVL-1 contig13645, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68105

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14007--14241
32
7.7
29
75
9
175
26
28
11
34
1.90
14072--14242
90
1.9
90
91
0
279
25
28
11
35
1.90
13972--14241
61
4.3
61
73
11
174
26
28
10
33
1.90
14351--14389
19
2.1
19
85
4
53
53
5
2
38
1.37
15661--15690
15
2.1
15
93
6
53
66
0
0
33
0.92
27456--27518
31
2.1
28
85
8
81
19
19
17
44
1.87
28180--28213
2
17.0
2
100
0
68
50
0
0
50
1.00
29231--29289
32
1.9
30
93
6
100
47
6
16
28
1.72
29764--29796
11
3.0
11
90
0
57
45
9
6
39
1.61
29760--29804
22
2.1
21
91
4
72
44
6
6
42
1.57
33989--34063
30
2.5
30
86
4
98
25
30
30
13
1.94
39106--39180
23
3.2
23
88
1
114
44
28
13
14
1.83
58586--58622
18
2.1
18
89
0
56
5
10
40
43
1.63
58787--58837
22
2.3
24
74
16
56
45
0
5
49
1.26
62984--63020
16
2.4
15
86
4
56
0
32
0
67
0.91
65040--65075
2
18.0
2
88
11
56
50
2
0
47
1.15
65400--65424
12
2.1
12
100
0
50
36
40
8
16
1.77

Tables:   1

The End!